Establishment method and application of prognostic marker and prognostic risk assessment model of squamous cell carcinoma
A risk assessment model and prognostic marker technology, applied in the field of biomedicine, can solve the problems of insufficiency and accuracy of the prognosis of squamous cell carcinoma, low technical specificity and sensitivity, limited ability to diagnose squamous cell carcinoma in early stage, etc. Application value, improving detection sensitivity and specificity, and the effect of high diagnostic efficiency
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[0088] A TP63-SOX2-based prognostic risk assessment model for squamous cell carcinoma was developed by two independent cohorts. Among them, the TCGA-LUSC cohort of lung squamous cell carcinoma was used as the training set to establish the risk assessment model. Two cohorts GSE37745 (65 samples) and GSE29013 (25 samples) in GEO were used as test sets for model validation. Three additional squamous cell carcinoma types (CESC, ESCA, HNSC) in the TCGA database were used to explore whether this model is applicable in all squamous cell carcinomas.
[0089] The method steps for constructing the prognostic risk assessment model for evaluating squamous cell carcinoma are as follows:
[0090] (1) Data collection and processing
[0091] The RNA sequencing data and corresponding clinical information of 4 TCGA tumor patients were downloaded from UCSC Xena dataportal (https: / / xenabrowser.net / ) and The Cancer Genome Atlas Program database (TCGA, https: / / portal.gdc.cancer.gov / ).
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