Application of polymorphism of retinoid X receptor alpha (RXRA) genes to adverse reactions of antituberculous drugs
A technology for adverse reactions and tuberculosis, applied in the direction of biochemical equipment and methods, microbial determination/testing, etc., can solve the problem of lack of susceptibility gene loci
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Embodiment 1
[0052] Mining of susceptibility SNP loci for liver injury induced by anti-tuberculosis drugs
[0053] 1 Inclusion of TB population in western China
[0054] A total of 1060 highly suspected tuberculosis patients who were treated at West China Hospital of Sichuan University from December 2016 to April 2018 were continuously included. According to the typical tuberculosis symptoms, microbiology and imaging results to confirm the diagnosis of tuberculosis patients, and excluding patients with liver disease and poor compliance during treatment or follow-up lost contact, this embodiment finally included 746 tuberculosis patients (see figure 1 ).
[0055] The inclusion and exclusion criteria are as follows:
[0056] Inclusion criteria: 1) have typical symptoms and signs of tuberculosis; 2) positive acid-fast stained smears or positive Mycobacterium tuberculosis culture or positive nucleic acid test; 3) imaging data showing typical evidence of active tuberculosis lesions; 4) diseas...
Embodiment 2
[0097] This embodiment provides a method for detecting the genotypes of rs55735339 and rs59211076, which is a small sequencing method, that is, a single base extension termination method. see the principle figure 2 Roughly as follows: in a reaction system containing sequencing enzymes, four kinds of fluorescently labeled ddNTPs, different length extension primers and PCR product templates close to the 5' or 3' end of the polymorphic site, the primer is extended by one base and then terminated, and finally The fluorescent signal is read by ABI3730 capillary electrophoresis, and the type of base incorporated can be known according to the color of the peak, so as to determine the genotype of the site. At the same time, multiplex PCR technology is used to detect multiple known sites.
[0098] The partial nucleotide sequences of the two SNP sites rs55735339 and rs59211076 on the RXRA gene are shown in Table 10 below.
[0099] The nucleotide sequences of the two SNP sites of rs557...
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