Fetal chromosome ploidy detection analysis method based on multiple indexes
A chromosome ploidy and analysis method technology, applied in the field of fetal chromosome ploidy detection and analysis based on multiple indicators, can solve the problems of increasing false negative results, interfering with data analysis, and ineffective presentation of data information, and achieve reliable and accurate results. Effect
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[0061] In order to achieve the purpose of the present invention, the present invention includes five main steps: (1) quality control step; (2) fetal DNA content estimation step; (3) calculation Z, ZZ, BM statistical index step; (4) output chart step; 5) Results evaluation step. Specific as figure 1 Shown.
[0062] (1) Quality control steps
[0063] (1.1) Use FastQC to check the sequencing quality results, check the sequence sequencing score distribution, GC distribution and repetition rate; count the total number of all sequences, including the total number of reads, total base number, sequence length, Q20, Q30, GC content, N Quantity, Q20%, Q30%, GC% content, N%.
[0064] (1.2) Use AdapterRemoval to remove the linker sequence contained in the 5'and 3'ends of the sequence.
[0065] (1.3) In this step, the program Seqtk is used to trim the index at the beginning and the end of the sequence or the sequence with poor sequencing quality.
[0066] (1.4) Use a sliding window to filter low...
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