Primers, probes, detection system and kit for one time detection of intestinal cancer multiple gene mutation
A kit and technology for colorectal cancer, applied in biochemical equipment and methods, recombinant DNA technology, microbial assay/inspection, etc., can solve the problems of low detection throughput and long time consumption, achieve consistent detection reaction system and save costs Effect
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Embodiment 1
[0046] According to the wild-type gene sequences of human KRAS, NRAS, BRAF and PIK3CA published by Cosmic data, specific primers and new probes were designed based on the driver mutation sites of KRAS, NRAS, BRAF and PIK3CA (see Table 1 ).
[0047] In this embodiment, the mutations of KRAS-M1, KRAS-M5, KRAS-M7, KRAS-M15, KRAS-M22, NRAS-M10, NRAS-M7, NRAS-M1, NRAS-M12, PIK3CA-M1, and BRAF-M1 are respectively An example is used to illustrate the detection of the above intestinal cancer mutation gene by fluorescent PCR of the present invention.
[0048] The experiment uses plasmid templates containing the above mutations respectively, and its fluorescent PCR detection includes the following steps:
[0049] (1) Plasmid treatment and extraction:
[0050] The extraction of each plasmid was performed using a plasmid extraction kit, and the specific extraction steps were operated according to the instructions of the kit. The extracted DNA was dissolved in Tris-HCl (10mmol / L, PH8.0)...
Embodiment 2
[0070] In August 2013, 4 positive samples and 16 negative samples of paraffin-embedded tissue samples of clinical intestinal cancer confirmed by direct sequencing method were sent to our company for one-time multiple detection of intestinal cancer gene mutations.
[0071] 1. Extraction of test sample DNA: DNA extraction can use Xiamen Aide Biomedical Technology Co., Ltd. FFPE sample DNA isolation kit, Cat No. ) or QIAGEN Paraffin Tissue DNA Extraction Kit, Cat NO.56404; follow the instructions of the extraction kit. The extracted DNA was dissolved in Tris-HCL (10mmol / L, pH8.0). The quality of the extraction was detected by a UV spectrophotometer to determine its concentration OD 260 / OD 280 1.8 ~ 2.0, then use Tris-HCL (10mmol / L, pH8.0) solution to adjust the DNA concentration to 2ng / μL as a PCR template. The DNA extracted above was used as a template for fluorescent PCR amplification of intestinal cancer mutant genes.
[0072] 2. Carry out PCR amplification of each DNA me...
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