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DPO (Dual Priming Oligonucleotide) primer group for porcine epidemic diarrhea virus, porcine transmissible gastroenteritis virus and porcine rotavirus detection and application of DPO primer group

A porcine epidemic diarrhea and DPO primer technology, which is applied in the direction of recombinant DNA technology, microbial measurement/testing, biochemical equipment and methods, etc., can solve the problem of inability to use efficient and quick pathogen diagnosis, complicated PCR primer design process, and endangering pig breeding Industry development and other issues, to achieve the effect of fast detection, simple design, and good specificity

Active Publication Date: 2018-05-22
NORTHEAST AGRICULTURAL UNIVERSITY
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

This patented technology uses two different techniques - one involves combining certain chemical substances together into small molecules that form tiny particles called DNA probes or dots (DNA) which when exposed to light activate genetic material within cells causing them to produce various types of signals such as changes in pH levels inside their body tissues. These signals help detect diseases caused by these microorganisms.

Problems solved by technology

This patents describes different techniques or diagnostic tools currently available but each technique suffers from various drawbacks such as low precision, time consumption, complexity, difficulty in identifying certain types of bacteria with varying degrees of severity, limited ability to detect many disease agents simultaneously, lack of sufficient sensitiveness towards common strains found among all three species, etc., making current testing procedures challenged because there may still remain some cases where no effective treatment protocol exists.

Method used

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  • DPO (Dual Priming Oligonucleotide) primer group for porcine epidemic diarrhea virus, porcine transmissible gastroenteritis virus and porcine rotavirus detection and application of DPO primer group
  • DPO (Dual Priming Oligonucleotide) primer group for porcine epidemic diarrhea virus, porcine transmissible gastroenteritis virus and porcine rotavirus detection and application of DPO primer group
  • DPO (Dual Priming Oligonucleotide) primer group for porcine epidemic diarrhea virus, porcine transmissible gastroenteritis virus and porcine rotavirus detection and application of DPO primer group

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0056] Example 1 Design and Synthesis of DPO Primer Sets for Simultaneous Detection of Porcine Epidemic Diarrhea Virus, Porcine Transmissible Gastroenteritis Virus and Porcine Rotavirus

[0057] By the biological information analysis of PEDV, TGEV and PRoV genome, the present invention has determined TGEV-N gene (shown in SEQ ID NO.1), PEDV-N gene (shown in SEQ ID NO.6), PoRV-VP7 gene (shown in SEQ ID NO.6) ID NO.7) as the detection target gene. According to the gene sequence registered in GenBank, highly conserved regions were screened out using DNAMAN. Specifically: the 32-212th sequence of the TGEV N gene, the 776-992nd sequence of the PEDV N gene, and the 25th-311th sequence of the PRoV VP7 gene. A pair of DPO primer pairs were designed and synthesized for the above conserved sequences, as shown in Table 1 below.

[0058] Table 1 DPO primer sequence

[0059]

[0060] Wherein, "I" represents inosine.

Embodiment 2

[0061] Example 2 Establishment of multiple DPO-real time RT-PCR method for simultaneous detection of porcine epidemic diarrhea virus, porcine transmissible gastroenteritis virus and porcine rotavirus

[0062] 1. Establishment of detection method for porcine transmissible gastroenteritis virus

[0063] (1) Extract the total RNA of the sample to be tested

[0064] Take about 100mg of test sample tissue, negative sample tissue or known positive PEDV, TGEV and PRoV virus cell culture in an ice-bath homogenizer, add 1ml Trizol (Invitrogen, USA), quickly grind into a homogenate, add 200μl chloroform , shake for 30 seconds, and place on ice for 5 minutes. 4°C, 12000rpm, centrifuge for 10min, take the upper aqueous phase and transfer it to another 1.5ml centrifuge tube, add an equal volume of isopropanol, invert and mix well, and stand at -20°C for 2h. Then 4°C, 12000rpm, centrifuge for 20min, discard the supernatant, add 1ml of 75% ethanol, mix gently, 4°C, 12000rpm, centrifuge for...

Embodiment 4

[0100] Embodiment 4 is used for the composition of the DPO-real time RT-PCR kit that porcine transmissible gastroenteritis virus detects

[0101] The DPO-real time RT-PCR kit includes: reverse transcription PCR reaction solution, dNTP RNasin random primer M-MLV FastStart Universal SYBRGreen Master, three pairs of DPO primers (10 uM, Example 1), three positive standards (pMD-TGEV-N, pMD-PEDV-N and pMD-PROV plasmids), negative control, and RNase-free water.

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Abstract

The invention discloses a DPO (Dual Priming Oligonucleotide) primer group for porcine epidemic diarrhea virus, porcine transmissible gastroenteritis virus and porcine rotavirus detection and application of the DPO primer group. Aiming to a TGEV-N gene, a PEDV-N gene and a PRoV-VP7 gene, a pair of DPO primers respectively, and a multiplex DPO real-time RT-PCR detection method of a porcine epidemicdiarrhea virus, a porcine transmissible gastroenteritis virus and a porcine rotavirus is established. Results show that a detection limit of the method is 5.3*100 copies/microlitre, target gene fragments can be efficiently amplified within an annealing temperature range from 40 DEG C to 65 DEG C, and shown that the method is wide in annealing temperature range; and meanwhile, the DPO primers are strong in specificity, and no non-specific amplification is generated in the PCR process. The multiplex DPO real-time RT-PCR detection method provided by the invention is simple to design, strong in specificity and high in sensitivity and provides a new technological means to rapid and accurate detection of three porcine viral diarrhea infective pathogens of TGEV, PEDV and PRoV.

Description

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Claims

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Application Information

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Owner NORTHEAST AGRICULTURAL UNIVERSITY
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