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Venn graph manufacturing method based on microbe genome second-generation sequencing data and system thereof

A second-generation sequencing and production method technology, applied in the field of data processing, can solve problems such as complex process, time-consuming Venn diagram, microbial genome second-generation sequencing data cannot be compatible with R language, etc., to achieve strong process adaptability and drawing process simple effect

Active Publication Date: 2019-05-07
INST OF BASIC MEDICINE OF SAMS
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

[0006] The inventor found that the existing process of drawing the Venn diagram is complicated, and the second-generation sequencing data of the microbial genome is not compatible with the R language, and it takes a lot of time to generate the Venn diagram

Method used

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  • Venn graph manufacturing method based on microbe genome second-generation sequencing data and system thereof
  • Venn graph manufacturing method based on microbe genome second-generation sequencing data and system thereof
  • Venn graph manufacturing method based on microbe genome second-generation sequencing data and system thereof

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Embodiment Construction

[0051] It should be noted that the following detailed description is exemplary and intended to provide further explanation of the present disclosure. Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure belongs.

[0052]It should be noted that the terminology used herein is only for describing specific embodiments, and is not intended to limit the exemplary embodiments according to the present disclosure. As used herein, unless the context clearly dictates otherwise, the singular is intended to include the plural, and it should also be understood that when the terms "comprising" and / or "comprising" are used in this specification, they mean There are features, steps, operations, means, components and / or combinations thereof.

[0053] Explanation of terms:

[0054] Next-generation sequencing: It can sequence hundreds of thousands to millions of DNA mole...

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Abstract

The invention provides a Venn graph manufacturing method based on microbe genome second-generation sequencing data and a system thereof, wherein the Venn graph manufacturing method based on the microbe genome second-generation sequencing data comprises the steps of clustering microbe genome second-generation sequencing data, clustering the microbe genome sequences with similarities which are higher than a preset threshold for forming one OUT, wherein each OUT corresponds with one microbe kind, generating OTUs table data; combining specimens with the same source in the OTUs table data; introducing the combined OTUs table data into an Excel table, generating a vector which can be identified by an R-language VennDiagram package through an Excel function; and drawing a Venn graph through the R-language VennDiagram package.

Description

technical field [0001] The present disclosure relates to the field of data processing, in particular to a method and system for making a Venn diagram based on next-generation sequencing data of microbial genomes. Background technique [0002] The statements in this section merely provide background information related to the present disclosure and do not necessarily constitute prior art. [0003] A Venn diagram is a sketch used to represent sets (or classes) in a less strict sense in the so-called set theory (or class theory) branch of mathematics. They are used to show the mathematical or logical connections between different groups of things (sets), especially suitable for expressing the "rough relationship" between sets (or) classes, and it is often used to help deduce (or understand) Derivation process) some rules about set operations (or class operations). [0004] Bacterial 16S rRNA gene (16S rDNA or 16S rRNA gene) is a gene encoding the small subunit of prokaryotic ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G16B30/10G16B45/00G06F8/34
Inventor 刁玉涛成丽娟陈芳刘红艳李莲莲张晓瑜阴海鹏张之勇
Owner INST OF BASIC MEDICINE OF SAMS
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