Method for compositely detecting tobacco common mosaic virus and potato virus Y in one step and primers thereof
A technology for compound detection and mosaic virus, which is applied in biochemical equipment and methods, microbial measurement/testing, DNA/RNA fragments, etc. It can solve the problems of high requirements for virus sample materials, limited experimental conditions, and limited wide application. , to achieve the effects of reducing influencing factors, ensuring accuracy, and high virus pathogen specificity
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Embodiment 1
[0021] (1) Use DNAMAN6.0 to compare the whole genome sequences of TMV and PVY virus strains and isolates from different regions included in GenBank, and determine the relatively conserved regions in the virus sequences. Primers were designed using Primer Premier software in the selected conserved regions, and analyzed with BLAST tool (http: / / blast.ncbi.nlm.nih.gov / Blast.cgi) to ensure primer specificity. Finally, two pairs of primers were selected. PVY: Upstream primer (PF) 5'-GGATCAATGCATCCTGTCATAC-3'; Downstream primer (PR) 5'-GCYTTGTCAGACCAATCTTTCC-3'. TMV: Upstream primer (TF) 5'-CGGAGATCTCGACAGTCATGTG-3'; Downstream primer (TR) 5'-TACAGGCGTAAACATCGACGG-3'. The primers were synthesized by Shanghai Sangon Bioengineering Co., Ltd., and dissolved in RNase-free water according to the synthesis instructions to a working concentration of 20 μm;
[0022] (2) Use Agdia’s TMV and PVY diagnostic kits (PathoScreen TMV, PathoScreen PVY) detection and analysis of virus tobacco leaf...
Embodiment 2
[0028] (1) Artificially synthesize two pairs of virus-specific primers. PVY: upstream primer (PF) 5'-GGATCAATGCATCCTGTCATAC-3'; downstream primer (PR) 5'-GCYTTGTCAGACCAATCTTTCC-3'. TMV: Upstream primer (TF) 5'-CGGAGATCTCGACAGTCATGTG-3'; Downstream primer (TR) 5'-TACAGGCGTAAACATCGACGG-3'. Dissolve in RNase-free water to a working concentration of 20 μm according to the synthesis instructions;
[0029] (2) Use Agdia’s TMV and PVY diagnostic kits (PathoScreen TMV, PathoScreen PVY) detection and analysis of virus tobacco leaf samples collected in Daejeon Tobacco Area, and the tobacco leaf samples infected with TMV and PVY were found by serological methods;
[0030] (3) Extraction of total RNA from tobacco leaves
[0031] The Ez Spin Column Plant Isolation Kit from Bio Basic Company was used to extract TMV and PVY total RNA respectively.
[0032] (4) Establishment of one-step compound RT-PCR reaction conditions
[0033] The RT-PCR in this experiment uses PrimeScript One Ste...
Embodiment 3
[0035] (1) Artificially synthesize two pairs of virus-specific primers. PVY: upstream primer (PF) 5'-GGATCAATGCATCCTGTCATAC-3'; downstream primer (PR) 5'-GCYTTGTCAGACCAATCTTTCC-3'. TMV: Upstream primer (TF) 5'-CGGAGATCTCGACAGTCATGTG-3'; Downstream primer (TR) 5'-TACAGGCGTAAACATCGACGG-3'. Dissolve in RNase-free water to a working concentration of 20 μm according to the synthesis instructions;
[0036] (2) Use Agdia’s TMV and PVY diagnostic kits (PathoScreen TMV, PathoScreen PVY) detection and analysis of virus tobacco leaf samples collected in Daejeon Tobacco Area, and the tobacco leaf samples infected with TMV and PVY were found by serological methods;
[0037] (3) Extraction of total RNA from tobacco leaves
[0038] The Ez Spin Column Plant Isolation Kit from Bio Basic Company was used to extract the total RNA of TMV and PVY respectively, and mixed in equal amounts as the virus nucleic acid template for one-step compound RT-PCR.
[0039] (4) Establishment of one-step c...
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