An acceleration device, method and computer equipment for gene similarity analysis

Abstract

The embodiment of the present invention provides an acceleration device, method and computer equipment for gene similarity analysis, the acceleration device includes a high-speed communication interface, used to communicate with the host, and receive tasks to be accelerated processing distributed by the host; a sequence buffer module , used to cache one or more tasks from the host, each task includes a plurality of gene sequence data to be analyzed for gene similarity; the array processor is provided with a processing unit for processing tasks, and the processing unit is provided with A complete pipeline for processing tasks based on a data-driven streaming computing mode, in which multiple fixed-point computing components required for processing tasks are configured; a control module configured to allocate tasks to be processed in the sequence buffer module to A processing unit; a task cache module, on which a task cache unit is arranged to cache tasks to be processed assigned to the processing unit. The invention can improve the efficiency of gene similarity analysis and quickly obtain analysis results.

Description

technical field [0001] The present invention relates to the technical field of biological gene data processing, in particular to an acceleration structure for graphical gene similarity algorithms, and more specifically to an acceleration device, method and computer equipment for gene similarity analysis. Background technique [0002] With the completion of the Human Genome Project, human beings have made unprecedented progress in understanding and mastering genetic information. At the same time, with the continuous development and improvement of genetic detection technology at the molecular level, gene sequencing technology has developed rapidly. High-throughput and low-cost sequencing technology has been widely used, and a large number of gene and protein data of different species have been accumulated. Facing the explosive growth of gene sequence data, how to analyze and interpret the useful information contained in gene sequences has become the key to current biological r...

AI Technical Summary

Problems solved by technology

[0006] It can be seen that the limited number of computing cores in general-purpose processors limits the improvement of algorithm concurrency, making the complex Cache mechanism and branch control logic in general-purpose processors not only unable to exert corresponding effects, but also consumes a large amount of silicon chip area. high energy consumption

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