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Construction method of high-throughput single cell full-length transcriptome sequencing library, kit and sequencing method

A technology of transcriptome sequencing and construction method, which is applied in the field of gene sequencing, can solve the problems of high overall cost and unsuitability for large-scale clinical application, and achieve the effect of improving throughput and reducing cost

Pending Publication Date: 2022-07-12
重庆医科大学国际体外诊断研究院
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Problems solved by technology

[0006] At present, part of the manual operation of single-cell transcriptome sequencing has been replaced by automated equipment, but the overall cost is still high. Taking the Chromium system of 10X Genomics as an example, the preparation cost of a single cell is about 0.15-1 US dollars, which is not yet suitable for large-scale clinical application
[0007] Therefore, large-scale single-cell full-length transcriptome sequencing is still a major challenge for single-cell sequencing.

Method used

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  • Construction method of high-throughput single cell full-length transcriptome sequencing library, kit and sequencing method
  • Construction method of high-throughput single cell full-length transcriptome sequencing library, kit and sequencing method
  • Construction method of high-throughput single cell full-length transcriptome sequencing library, kit and sequencing method

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Experimental program
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Embodiment 1

[0057] Material:

[0058] Table 1 Reagents and materials

[0059]

[0060] 1. High-efficiency, high-throughput single-cell processing

[0061] A cross-shaped polydimethylsiloxane (PDMS) microfluidic chip was designed and fabricated, and the PDMS chip was fabricated by standard soft lithography technology. The width of the water phase at the cross is 200 microns, the width of the oil phase is 100 microns, and the height of the chip is 50 microns. When generating droplets, the total flow rate of the water phase is 0.3mL / h, and the total flow rate of the oil phase is 1.0mL / h, and the diameter of the obtained droplets is about 65 microns ( Figure 4 ).

[0062]Using a microfluidic droplet chip, single cells were wrapped in acrylamide droplets of about 65 microns. Acrydite-modified mRNA capture probe (Oligo-T30: acrydite-AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT) and acrylamide in the initiator The mRNA capture probes were covalently coupled to the interior of...

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Abstract

The invention discloses a construction method of a high-throughput single cell full-length transcriptome sequencing library, a kit and a sequencing method, and relates to the technical field of gene sequencing. According to the invention, high-throughput sequencing analysis of 10-107 single-cell full-length transcriptomes is realized simultaneously by creatively adopting a specific tag method on the basis of combining a droplet microfluidic technology, a splitting and combining technology and a high-throughput sequencing technology, and the technical problem of large-scale single-cell full-length transcriptome sequencing is solved; the existing single cell transcriptome sequencing technology is modified and perfected, the sequencing cost is reduced, and the detection flux is improved.

Description

technical field [0001] The invention relates to the technical field of gene sequencing, in particular, to a construction method and kit for a high-throughput single-cell full-length transcriptome sequencing library, and a sequencing method. Background technique [0002] Single-cell transcriptome sequencing (scRNA-seq) technology is a new focus in the global life sciences and a new tool for biomedical research. Single-cell transcriptome sequencing can sequence the entire RNA molecule at the single-cell level, which can reveal the heterogeneity between cells (Heterogeneity), not only can identify cell subtypes, but also reveal their functional status, developmental process, lineage Sources and interactions, etc., have extremely important application prospects in the fields of oncology, developmental biology, immunology, microbiology, and neuroscience. Therefore, various countries have launched a series of major single-cell funding programs, such as the Single Cell Analysis Pr...

Claims

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Application Information

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IPC IPC(8): C40B50/06C12Q1/6869C12Q1/6806C12Q1/6813
CPCC40B50/06C12Q1/6869C12Q1/6806C12Q1/6813C12Q2531/113C12Q2525/191C12Q2535/122C12Q2565/629Y02A90/10
Inventor 邹远
Owner 重庆医科大学国际体外诊断研究院
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