The invention belongs to the field of animal breeding science, biology of development and cytobiology, and relates to a method for analyzing and controlling network regulation and control by using expression pattern data and a related biological information tool. The method comprises the steps of: firstly, establishing a data set of creatinine related genes, calculating a weight model of each gene, preliminarily selecting gene expression regulation and control; secondly, solving related coefficients and solving, and constructing a network diagram; and finally, by combining with the established integer nonlinear planning model, and on the basis of a KEGG (Kyoto Encyclopedia of Genes and Genomes) database, constructing a network regulation and control diagram of the creatinine related genes. According to the invention, Rugao yellow chickens as a local chicken variety in China are used as materials to construct oligonucleotide probes of eight key enzymes in an IMP synthetic path, an RNA (Ribose Nucleic Acid) level-based regulation and control model is screened on the basis of molecular hybridization, and expression difference of a favor material, i.e. IMP synthetic key enzyme, on the transcriptional level is disclosed. The method provides a theoretical foundation for cultivation and industrial development of excellent-quality chickens.