Low fluorescence nylon/glass composites for micro-analytical diagnostic applications

Abstract

An improved combination non-luminescent microporous membrane and solid support for use in micro-analytical diagnostic applications is disclosed. Specifically, composite microarray non-luminescent slides having a microporous membrane effectively attached by covalent bonding through a surface treatment to a substrate that prepares the substrate to sufficiently, covalently bond to the non-luminescent microporous membrane formed by a phase inversion process such that the combination produced thereby is useful in microarray applications and wherein the porous non-luminescent nylon composite microarray slides are covalently bonded to a solid base member, such as, for example, a glass or Mylar microscope slide, such that the combination produced thereby is useful in microarray applications. Apparatus and methods for fabricating the non-luminescent composite microarray slides are also disclosed.

Description

[0001] This application is a continuation-in-part of commonly owned U.S. Provisional Patent Application Serial No. 60 / 224,141, entitled "Improved Low Fluorescence Nylon / Glass Composites for Micro-Analytical Diagnostic Applications" of Ostreicher et al., filed Aug. 10, 2000, and is related to commonly owned U.S. Provisional Patent Application Serial No. 60 / 216,229, entitled "IMPROVED NON-LUMINESCENT SUBSTRATE" of Rita J. Andreoli, filed Jul. 5, 2000, and U.S. Provisional Patent Application Serial No. 60 / 216,390, entitled "Improved Combination of Microporous Membrane and Solid Support for Micro-Analytical Diagnostic Applications" of M. Amin et al., filed Jul. 6, 2000, the disclosure of each is herein incorporated by reference to the extent not inconsistent with the present disclosure.BACKGROUND OF THE DISCLOSURE[0002] The present disclosure relates to composite microarray non-luminescent slides useful for carrying a microarray of biological polymers on the surface thereof and, more pa...

AI Technical Summary

Benefits of technology

The present patent is about a method for making composite microarray non-luminescent slides that can be used for carrying a microarray of biological polymers. The slides have a surface treatment that prepares the substrate to covalently bond to a microporous membrane formed by a phase inversion process. The surface treatment does not add any non-uniformity to the overall thickness of the slides and is designed to minimize interference with the detection of analytes. The technical effects of the invention include improved sensitivity and accuracy in microarray applications, reduced non-uniformity in the overall thickness of the slides, and minimized interference with the detection of analytes.

Problems solved by technology

"Dot-blot" procedures are therefore inadequate for applications in which many thousand samples must be determined.

A limitation with this approach is that the volume of DNA spotted in each pixel of each array is highly variable.

In addition, the number of arrays that can be made with each dipping is usually quite small.

The extra thickness of the overall nylon membrane / glass slide combination caused by the glue / adhesive and the reinforcing scrim is a disadvantage in microarray applications.

Additionally, the scrim makes the surface of the membrane of the nylon membrane / glass slide combination uneven and less than ideal from a cosmetic standpoint.

Even further, the chemistry of the glue or adhesive used to attach the nylon membrane to the glass slide is not necessary optimal to effectuate the combination, nor is it necessarily compatible with the biomolecules or analytes for which the product is intended to receive, as it may interfere or react with the analyte.

However, in microarray applications, binding nucleic acids or proteins directly to a glass substrate has certain disadvantages.

Nitrocellulose is more brittle than the nylon membrane, has more pore variability and is extremely flammable.

The physical weakness, variability and flammability of the nitrocellulose membranes combine to make nitrocellulose membrane more expensive to manufacture than nylon membrane.

As discussed above, there are at least three main disadvantages to scrim-reinforced nylon glued or otherwise adhered to a glass substrate.

The arraying robots that blot the nylon membranes have narrow spatial tolerances, and any additional thickness represents additional uncertainty about accurate positioning of the combination scrim-reinforced nylon / glass slide relative to the arraying robots.

The second, and more important, disadvantage is that the scrim-reinforced membrane on the combination scrim-reinforced nylon / glass slide has an irregular surface on the micro scale.

This is an important cosmetic problem since the spot sizes made on the membrane are on a similar scale.

Finally, the glue / adhesive and the analyte may not be compatible.

As time progressed, however, it became apparent that nitrocellulose was a less than an ideal solid-phase hybridization matrix, as nucleic acids are attached to the nitrocellulose support by hydrophobic, rather than by covalent, interactions, and the nucleic acids are released slowly from the matrix during hybridization and washing at high temperatures.

These matrices however, like nitrocellulose itself, also suffer from a significant disadvantage in that they become brittle when dry and cannot survive more than one or two cycles of hybridization and washing, i.e., "reprobing."

While polyamide matrices have found considerable use in isotopic assay systems, such matrices have not found widespread use in fluorescent assay systems.

This is likely because fluorescent assay systems employing polyamide substrates demonstrate less than desirable sensitivity.

When light in the excitation waveband causes fluorescence of the support material, interference with detection occurs if the emission waveband of the fluorophore overlaps the same.

While present luminescent assays proffer an alternative to isotopic labeling, the sensitivity of such assays is still not within a range desired by many in the biomedical, genetic research and drug discovery communities.

Additionally, isotopic labeling cannot be used in multiplex assays, in which two or more nucleic acid probes which have been separately labeled each with their own unique wavelength-emitting luminescent molecule can be simultaneously hybridized, then simultaneously detected on an array of bound nucleic acid targets affixed to the polymeric substrate.

Multiplexing saves significant cost and time when compared to the traditional steps of stripping and reprobing when performing multiple queries on a given array of targets.

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