Androgen receptor antisense oligonucleotides
A peptide nucleic acid and polymer technology, applied in the field of peptide nucleic acid derivatives, can solve the problem of no androgenetic alopecia local treatment, and achieve the effect of good cell permeability and reduced risk of cross-reactivity
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Embodiment 1
[0328] Example 1. Exon skipping induced by "ASO 5"
[0329] "ASO 5" designated in Table 1 is a 13-mer antisense oligonucleotide that binds to a 20-mer RNA sequence [(5'→3')GC CUUGCCUG ┃ guaag gaaaa] The 13-mer sequence marked "bold" and "underlined" has a 13-mer full complementary overlap, and the 20-mer RNA sequence spans "exon 5" within the human AR pre-mRNA and the junction of "intron 5".
[0330] The ability of "ASO 5" to induce AR "exon 5" skipping in MCF7 cells (Cat. Number: HTB-22, ATCC) was evaluated by AR nested PCR. The procedure employed is detailed below.
[0331] [Cell culture and ASO treatment] at 37°C, in 5% CO 2 MCF7 cells were grown in EMEM medium supplemented with 10% FBS, 1% streptomycin / penicillin and 0.01 mg / ml bovine insulin under atmosphere. Cells were subcultured in 60 mm dishes and then treated with "ASO 5" at 3 aM-3 fM.
[0332] [RNA extraction] MCF7 cells were incubated with or without "ASO 5" for 3 hours. Total RNA was extracted from cells ...
Embodiment 2
[0336] Example 2. qPCR assessment of AR mRNA levels in MCF7 cells treated with "ASO 5"
[0337] The ability of "ASO 5" to downregulate human AR mRNA was assessed by qPCR with SYBR green detection.
[0338] MCF7 cells were subcultured in 5 mL medium in 60 mm dishes and treated with "ASO 5" at 0 zM (negative control)-1aM (2 dishes / each concentration). After 5 hours, total RNA was extracted with "MiniBEST Universal RNA Extraction Kit" according to the manufacturer's instruction (Cat. No. 9767, Takara). Following the manufacturer's instructions (Cat. No.6110A, Takara), 500 ng of RNA template was used to synthesize cDNA for a 50 μL reverse transcription reaction (using Oligo-dT). Then for a set of primers covering "exon 3" to "exon 9" [exon 3_forward: (5' → 3')TGGGTGTCACTATGGAGC, and exon 9_reverse: (5' → 3') GGGTG-TGGAAATAGAT-GGG], the cDNA was subjected to the first PCR, and the cycle conditions were as follows: 94°C for 2 min, followed by 15 cycles of 94°C for 15 sec, 55°C for...
Embodiment 3
[0341] Example 3. qPCR assessment of AR mRNA levels in MCF cells treated with "ASO 1"
[0342] Although "ASO 1" designated in Table 1 is a 13-mer antisense oligonucleotide, it was originally designed to complementarily target the junction of "exon 5" and "exon 6" within human AR mRNA. "ASO 1" with a 20-mer RNA sequence at the junction of "exon 5" and "intron 5" within human AR pre-mRNA [(5'→3')GC CUUGCCUG ┃ g The 9-mer sequences marked "bold" and "underlined" in "uaag" gaaaa] have 9-mer complementary overlaps. Notably, 4 single mismatches in intron 5 were marked as "uaag". Therefore, "ASO 1" can be regarded as an antisense oligonucleotide targeting human AR pre-mRNA, although only the 9-mer complementary overlaps in the 13-mer sequence.
[0343] The ability of "ASO 1" to downregulate human AR mRNA was assessed by qPCR according to the protocol described in "Example 2".
[0344] Figure 9 (B) provides the qPCR data obtained therefrom. When the ASO concentration was incre...
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