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Composite amplification kit for simultaneously detecting autosomal and Y chromosome STR loci

A compound amplification and Y chromosome technology, which is applied in the field of compound amplification kits for simultaneous detection of autosome and Y chromosome STR loci, can solve the problems of increasing detection time, shortening detection time, detection failure, etc., and achieve strong detection materials Adaptability, shorter detection time, and accurate typing

Pending Publication Date: 2019-11-08
安徽省公安厅物证鉴定中心 +2
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0003] At present, the Y chromosome STR kit (Yfiler Plus) and the autosomal STR kit (Identifiler) produced by ABI Company, which are most used in China, are affected by factors such as the status of the sample, the number of amplification sites, and the amplification system. The two PCR amplification processes take 5-6 hours, so the two inspection procedures often delay the best chance of catching the suspect because of the increased detection time, and also because of the physical evidence left by the suspect at the scene. The small amount leads to detection failure, and eventually leads to the loss of investigation clues
[0004] All in all, with the increase of criminal cases, the existing detection kits can no longer meet the requirements of public security for the rapid detection and on-site detection of forensic DNA in actual combat. How to realize the detection of autosomal STR loci and Y chromosome STR loci together , to shorten the detection time while improving the efficiency of excluding and identifying criminal suspects has become a problem to be solved

Method used

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  • Composite amplification kit for simultaneously detecting autosomal and Y chromosome STR loci
  • Composite amplification kit for simultaneously detecting autosomal and Y chromosome STR loci
  • Composite amplification kit for simultaneously detecting autosomal and Y chromosome STR loci

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0038] Example 1 Screening of autosomes and Y chromosome STR loci

[0039] 通过对DYS549、DYS522、DYS389I、DYS439、DYS447、DYS389II、DYS392、DYS576、DYS19、DYS388、DYS391、DYS635、DYS460、DYS456、DYS533、DYS520、DYS438、DYS527a / b、DYS449、DYS709、DYS622、DYS481、DYS437、 DYS390、DYS630、DYS448、Y_GATA_H4、DYS458、DYS607、DYS393、DYS552、DYS570、DYS385a / b、DYS593、DYS444、DYS643、Amelogenin、vWA、D10S1248、D2S441、D21S11、D18S51、D5S818、D7S820、D13S317、D16S539、FGA、 D2S1338, D22S1045, D1S1656, D19S433, D6S1043, D12S391, D8S1179, D3S1358, CSF1PO, Penta D, PentaE, TH01 and TPOX, a total of 62 loci, to ensure that the selected loci are compatible with commonly used kits (for example, ABI’s Identifiler and Yfiler Plus) loci have certain compatibility, and finally 20 Y chromosome STR loci were screened out (for example, locus names beginning with "DYS", including DYS391, DYS635, DYS576, DYS456, DYS385a / b, DYS438 , DYS448, DYS437, DYS19, DYS458, DYS533, DYS393, DYS389I / II, DYS439, DYS392, Y_GATA_H4, DYS390 and DYS481), 19 autosom...

Embodiment 2

[0044] Example 2 Group arrangement of 40 loci

[0045] DYS391, D3S1358, D13S317, D7S820, D16S539, Penta E, DYS635, DYS576 are the first group, and the fluorescent dye marker is 6-FAM; DYS456, TPOX, TH01, D2S1338, D6S1043, DYS385a / b, DYS438, DYS448 are the second group Group, fluorescent dye marker is HEX; DYS437, D19S433, vWA, DYS19, CSF1PO, D18S51, FGA is the third group, fluorescent dye marker is SUM; Amelogenin, D8S1179, D5S818, D21S11, D12S391, PentaD, DYS458, DYS533 are The fourth group, the fluorescent dye marker is LYN; DYS393, DYS389I / II, DYS439, DYS392, Y_GATA_H4, DYS390, DYS481 is the fifth group, the fluorescent dye marker is PUR, see the grouping diagram figure 1 shown.

Embodiment 3

[0046] Embodiment 3 specific primer design and the selection of primer concentration

[0047]With the increase of the number of primers in the multiplex amplification system, the mutual interference between primers at different loci becomes more and more serious, and the kinetics of the reaction system become more and more complex, so it is necessary to design a large number of primer sequences for complex testing And explore the specific concentration ratio between the primers in the compound amplification system, and finally ensure that more human autosomes and Y chromosome STR loci are compounded without reducing the specificity and sensitivity of the kit. Specifically, the following steps are included:

[0048] (1) Design of specific amplification primers

[0049] Before designing primers, it is necessary to analyze the properties of the target sequence to be tested, and select highly conserved regions with uniform base distribution for primer design.

[0050] a. Primer ...

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Abstract

The invention discloses a composite amplification kit for simultaneously detecting autosomal and Y chromosome STR loci. The kit at least comprises specific amplification primer pairs of 40 loci, and the sequences of the primer pairs include SEQ ID NO.1 to SEQ ID NO.78. The kit can simultaneously detect 20 Y chromosome STR loci, 19 autosomal STR loci and Amelogenin locus, not only is accurate in typing, but also shortens the detection time, and improves the efficiency of removing and determining criminal suspects.

Description

technical field [0001] The invention belongs to the field of analytical genetics, relates to a multiple amplification test system for human chromosome STR loci, in particular to a multiple amplification kit for simultaneously detecting autosome and Y chromosome STR loci. Background technique [0002] Since the 1990s, DNA-STR typing technology has become one of the main means of forensic evidence testing due to its advantages of good specificity, high sensitivity, simple and fast typing, and easy standardization. Currently commonly used STR detection kits include autosomal STR detection kits and Y chromosome STR detection kits, which can be used for individual identification detection and paternity detection, respectively. When a major criminal case occurs, the autosomal STR test is often performed on the physical evidence extracted at the scene first, and when it is confirmed that it is the physical evidence left by a male criminal suspect, the Y chromosome STR test is perfo...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6876C12N15/11
CPCC12Q1/6876C12Q2600/156
Inventor 陈林郑卫红王留柳张科耿学磊柳勇李发院郭育林郑卫国
Owner 安徽省公安厅物证鉴定中心
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