Method for screening gene chip difference expression gene
A technology for differentially expressed genes and screening genes, applied in the field of differentially expressed genes screening, which can solve problems such as large experimental errors, difficulty in estimating algorithm sensitivity and specificity, and lack of analytical methods for chip data.
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[0010] The specific method is described as follows:
[0011] First, use chip scanning image processing software (such as GenePix pro 4.0) to obtain expression value data at the gene level. Then, normalize the chip data between chips. Signal values from ChIP results were then converted into ratios relative to control experiments. Take the logarithm of the ratio (it is better to take e as the base). We used this log ratio (ln ratio) as the basis for the analysis.
[0012] Suppose we have n gene chips (corresponding to n samples, typically, 1
[0013]
[0014] where x ij is the ln ratio value of the i-th (1≤i≤m) gene in the j-th (1≤j≤n) chip.
[0015] Next we build a linear model:
[0016] x ij =μ+μ j +ε ②
[0017] where μ is the global mean, μ j is the column effect, and ε is the residual. We assume ε~N(0,σ 2 ). That is, it is assumed that the residual ε in different chips conforms to a norm...
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