Immune dominant HLA-A3 super-type restrictive CTL epitope of hepatitis B virus core antigen and identification method and application thereof
A technology of HLA-A3 and core antigen, which is applied in antiviral agents, biochemical equipment and methods, and microbial determination/inspection, etc., to reduce research costs, reduce workload, and speed up research progress
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[0021] Hereinafter, preferred embodiments of the present invention will be described in detail with reference to the accompanying drawings.
[0022] 1. Prediction of immunodominant HLA-A3 supertype-restricted CTL epitopes of HBcAg
[0023] The amino acid sequence (P03138) of the HBcAg registered in GenBank utilizes five online epitope prediction websites: SYFEPITHI (http: / / www.syfpeithi.de / Scripts / MHCServer.dll / EpitopePrediction.htm), BIMAS (http: / / www. - bimas.cit.nih.gov / molbio / hla_bind / ), SVMHC (http: / / www-bs.informatik.uni-tuebingen.de / Services / SVMHC), IEDB (http: / / tools.immunepitope.org / analyze / html / mhc_binding.html) and EpiJen (http: / / www.darrenflower.info / EpiJen / ) for immunodominant HLA-A3 supertype-restricted CTL epitope prediction: set MHC molecular restriction as HLA- A*0301, HLA-A*1101, HLA-A*3101, HLA-A*3301 and HLA-A*6801, the candidate epitope length is 9 peptides and 10 peptides; the cutoff value (cutoff) of different prediction algorithms is different: SYFPE...
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