Method using loop-mediated isothermal amplification technology to detect mycoplasma pneumoniae

A Mycoplasma pneumoniae and detection method technology, which is applied in the direction of biochemical equipment and methods, microbial measurement/inspection, etc., can solve the problems of LAMP-specific primers and kits, demanding requirements, and difficulty in popularization, etc., and is suitable for large-scale promotion Application, the effect of broad market prospects

Inactive Publication Date: 2017-10-10
TIANJIN MEDICAL UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0003] At present, the gold standard for laboratory diagnosis of mycoplasma is isolation culture, but the isolation culture method usually has two disadvantages. One is that the detection time is too long. It takes at least 3 weeks for a typical colony to grow on a solid plate, which is of little significance for rapid clinical diagnosis.
Second, isolation and culture are difficult and demanding, and it is difficult to promote in general hospitals and laboratories
[0005] The application of LAMP in the detection of Mycoplasma pneumoniae has been reported at home and abroad, but so far, there are no LAMP-specific primers and kits for the detection of Mp on the market.

Method used

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Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0035] Example 1. Primer Design for LAMP Detection of Mp

[0036]The Mp-specific conserved target sequence (Mycoplasma pneumonia M129chromosome, complete genome, NCBI reference sequence NC_000912.1) was retrieved from the American Gene Database. After uploading the target sequence, the online primer design software PrimerExplorerV5 was used to preliminarily obtain multiple sets of primer sequences. According to the key factors of LAMP primer design, mainly including the stability of the primer end, GC content, the distance between the primers and the secondary structure, it is screened, and finally the LAMP primer is obtained (see the summary of the invention for details).

Embodiment 2

[0037] Embodiment 2, the establishment of the LAMP detection method of Mp of the present invention

[0038] Use the primers obtained in Example 1 for LAMP detection of Mp to perform LAMP detection on the throat swab specimen, and the specific steps are as follows:

[0039] [1] Reaction system

[0040] The nucleic acid in the sample to be tested was extracted using the Genomic DNA Extraction Kit of Tienensis Bacteria or the supernatant was collected after boiling for 10 min as a template, and wasothermally amplified under the guidance of the special primers for LAMP obtained in Example 1. Among them, the 25 μl LAMP reaction system includes: 2 μl of genomic DNA containing Mp, 20mM Tris HCl (pH 8.8), 10mM KCl, 8mM MgSO4, 10mM (NH4)2SO4, 0.1% Tween20, 0.8M betaine (betaine), 1.4mM dNTP each, 8U Bst DNApolymerase (purchased from NEB Company), the amount of primers: 5pmol F3 and B3, 40pmol FIP and BIP.

[0041] [2] Result judgment

[0042] After the reaction, visually observe whe...

Embodiment 3

[0043] Embodiment 3, prepare the LAMP detection kit of Mp

[0044] The LAMP reaction mixture is the specific amplification primer (5pMol F3; 5pMol B3; 40pMol FIP; 40pMolBIP), Bst DNA polymerase (8U), 2× reaction buffer (40mM Tris-Hcl, pH 8.8; 20mM KCl; 16mMMgSO4; 20mM (NH4)2SO4; 0.2% Tween20; 1.6M Betaine; 2.8mM dNTP each), SYBR GREEN and positive control were packaged together to obtain the LAMP detection kit for Mp of the present invention.

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PUM

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Abstract

The invention discloses an LAMP (loop-mediated isothermal amplification) detection method of mycoplasma pneumoniae and the special primers and kit of the LAMP detection method. The special primers are used for performing fast isothermal amplification on the mycoplasma pneumoniae. The LAMP primers are designed according to the specific conservative sequence of pneumonia, and each group of primers comprises 4 oligonucleotides. When the special primers are used for mycoplasma pneumoniae detection, the primers are in the form of white precipitate under naked-eye observation; after SYBR GREEN is added during positive reaction, fluorescent green is evidently enhanced under ultraviolet-lamp observation. A real-time turbidity detection result shows that product turbidity increases along with the prolonging of reaction time, and the primers are in the form of trapezoid strips after gel electrophoresis detection. The method has the advantages that a new technical platform is provided for the mycoplasma pneumoniae detection, to-be-detected samples can be DNA extracted by commercial kits or purified DNA and coarsely-extracted DNA extracted by methods represented by a boiling method, and the method is suitable for being popularized and applied in basic units, field monitoring and bedside detection.

Description

technical field [0001] The invention belongs to the application of a molecular biology detection method represented by isothermal amplification in the detection of mycoplasma pneumoniae, that is, a loop-mediated isothermal amplification detection technology of mycoplasma pneumoniae and its special primers, detection method and kit. Background technique [0002] Mycoplasma (Mycoplasma) is a prokaryotic cell-type microorganism between bacteria and viruses. So far, there are about 20 species of mycoplasma that can cause human infection, among which mycoplasma pneumoniae (M.pneumoniae, Mp) is the most common. Mp is one of the important pathogens causing human respiratory tract infection, about 10% to 30% of community-acquired pneumonia is caused by its infection every year. Mp infection is distributed globally, it can be transmitted through droplets in the form of aerosol particles, and the population is generally susceptible. When Mp invades the respiratory tract, it locates ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12Q1/04
CPCC12Q1/6844C12Q1/689C12Q2531/119
Inventor 谷雅君
Owner TIANJIN MEDICAL UNIV
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