A kit for detecting hemolytic staphylococcus
A staphylococcus and kit technology, applied in the directions of microorganism-based methods, microbial determination/examination, biochemical equipment and methods, etc., can solve the problem of high cost, delay in disease treatment, inability to distinguish hemolytic staphylococcus from other staphylococci, etc. problems, to achieve the effect of low equipment requirements and high specificity
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Embodiment 1
[0016] Embodiment 1: Staphylococcus rpoB gene sequence alignment
[0017] Such as figure 1 As shown, in the rpoB gene sequence of Staphylococcus hemolyticus, the 5' end of the guide RNA sequence (selected part) of the present invention is the PAM structure of TTTN. The guide RNA sequence does not have a completely consistent sequence among Staphylococcus aureus, Staphylococcus human, Staphylococcus wahlschii, Staphylococcus capitula, and Staphylococcus epidermidis, and all have several base differences. In addition, there is no PAM structure of TTTN at the 5' end of the homologous sequence in Staphylococcus aureus, Staphylococcus human, Staphylococcus watterii, Staphylococcus capitum, and Staphylococcus epidermidis. Therefore, Cas12a protein cannot target To Staphylococcus aureus, Staphylococcus hominis, Staphylococcus worthii, Staphylococcus capitis, Staphylococcus epidermidis, therefore, only Staphylococcus hemolyticus can show positive reaction during detection, and other ...
Embodiment 2
[0018] Embodiment 2: The guide RNA specificity determination of the present invention, the steps are as follows:
[0019] (1) Prepare the standard bacterial strains of Staphylococcus hemolyticus, Staphylococcus aureus, Staphylococcus hominis, Staphylococcus worbachii, Staphylococcus capitis, Staphylococcus epidermidis;
[0020] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;
[0021] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmpbasic kit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQ No.3), 0.375 μl Ribonuclease Inhibitor (Takara Company), 3.5 μl buffer2.1 (NEB Company), 1000nM guide RNA (sequence is SEQ No.1), 250nM Cas12a (NEB Company), 200nM single-stranded DNA Probe (Shanghai Sangong), add water to make up to 25μl;
[0022] (4) React at a constant temperature of 37 degr...
Embodiment 3
[0025] Embodiment 3: the detection method based on guide RNA described in the present invention and traditional PCR method specificity and experimental time-consuming comparison
[0026] 1. based on the detection method of guide RNA described in the present invention, the steps are as follows:
[0027] (1) Prepare the standard bacterial strains of Staphylococcus hemolyticus, Staphylococcus aureus, Staphylococcus hominis, Staphylococcus worbachii, Staphylococcus capitis, Staphylococcus epidermidis;
[0028] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;
[0029] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmpbasic kit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQ No.3), 0.375 μl Ribonuclease Inhibitor (Takara Company), 3.5 μl buffer2.1 (NEB Company), 1000nM guide RNA (sequenc...
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