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Compositions and methods for treating cdk4/6-mediated cancer

a technology of cdk4/6 and chemotherapy, applied in the field of bivalent compounds, can solve the problems of limiting the administration of these inhibitors by toxicity

Pending Publication Date: 2022-02-24
MT SINAI SCHOOL OF MEDICINE
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Toxicity can limit the administration of these inhibitors at a concentration high enough to sufficiently inhibit Rb phosphorylation in the tumor.

Method used

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  • Compositions and methods for treating cdk4/6-mediated cancer
  • Compositions and methods for treating cdk4/6-mediated cancer
  • Compositions and methods for treating cdk4/6-mediated cancer

Examples

Experimental program
Comparison scheme
Effect test

example 1

Procedures for the Synthesis of VHL-1 Alkyl Linkers

[0209]

[0210]To a solution of diacid (10 mmol) in DCM / THF (1:1, 200 ml) was added VHL-1 (2 mmol), triethylamine (1 ml, 7.1 mmol), HOAt (300 mg, 2.2 mmol), and EDCI (420 mg, 2.2 mmol) sequentially at 0° C. The resulting solution was stirred for 2 h at 0° C., before being warmed to room temperature (RT). After stirring overnight at RT, the reaction was quenched with water. After concentration under reduced pressure, the resulting residue was purified by reverse-phase chromatography to yield the desired product.

[0211]Linker 1: 4-(((S)-1-((2S,4R)-4-Hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl) pyrrolidin-1-yl)-3,3-dimethyl-1-oxobutan-2-yl)amino)-4-oxobutanoic acid (810 mg, 85%) as white solid. 1H NMR (600 MHz CD3OD) δ 9.10 (s, 1H), 7.51 (d, J=7.8 Hz, 2H), 7.44 (d, J=8.4 Hz, 2H), 4.64 (s, 1H), 4.60-4.49 (m, 3H), 4.39 (d, J=15.6 Hz, 1H), 3.91 (d, J=10.8 Hz, 1H), 3.82 (dd, J=9.6, 3.6 Hz, 1H), 2.67-2.55 (m, 4H), 2.52 (s, 3H), 2.25-2....

example 2

Procedures for the Synthesis of VHL-1 PEG Linkers

[0219]

[0220]To a solution of diacid (4 mmol) in DMF (10 ml) and DCM (250 ml) was added NMM (10 mmol), VHL-1 (2 mmol), HOAt (2.4 mmol), and EDCI (2.4 mmol) at 0° C. The resulting reaction solution was stirred at 0° C. for 6 h and then at RT overnight. The progress of the reaction was monitored by LC / MS. After VHL-1 was totally consumed, the reaction was concentrated and the resulting residue was purified by reverse-phase chromatography to yield the product.

[0221]Linker 9: 2-(2-(((S)-1-((2S,4R)-4-Hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl) pyrrolidin-1-yl)-3,3-dimethyl-1-oxobutan-2-yl)amino)-2-oxoethoxy)acetic acid (810 mg, 69%) as white solid. 1H NMR (600 MHz, CD3OD) δ 8.97 (s, 1H), 7.47 (d, J=8.2 Hz, 2H), 7.43 (d, J=8.1 Hz, 2H), 4.69 (s, 1H), 4.60-4.47 (m, 3H), 4.36 (d, J=15.5 Hz, 1H), 4.27-4.17 (m, 2H), 4.16-4.07 (m, 2H), 3.89 (d, J=11.0 Hz, 1H), 3.81 (dd, J=11.0, 3.8 Hz, 1H), 2.48 (s, 3H), 2.22 (dd, J=13.1, 7.6 Hz, 1H), 2....

example 3

Procedures for the Synthesis of Pomalidomide Linkers

[0230]

[0231]A solution of pomalidomide analogue (1 eq.), amine (1 eq.), and N,N-diisopropylethylamine (1.5 eq.) in DMF (2.0 ml per mmol of pomalidamide) was heated to 85° C. in a microwave reactor for 40 min. After cooling to RT, the reaction was quenched with water and extracted with ethyl acetate (3×). The combined organic phase was dried over anhydrous sodium sulfate and concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography (eluted with hexanes / EtOAc: 0-100%) to give the desired t-Bu ester intermediate as oil. This intermediate was treated with a solution of hydrogen chloride in dioxane (4 M, 5 ml per mmol of pomalidamide) for overnight. After concentration under reduced pressure, the desired acid product was obtained as yellow oil.

[0232]Linker 18: 3-(2-((2-(2,6-Dioxopiperidin-3-yl)-1,3-dioxoisoindolin-4-yl)amino)ethoxy) propanoic acid. tert-Butyl 3-(2-aminoethoxy)propanoate (1.0 g,...

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Abstract

Methods for designing heterobifunctional small molecules which selectively degrade / disrupt CDK4 / 6 and compositions and methods of using such degraders / disruptors to treat CDK4 / 6-mediated cancer are provided.

Description

CROSS-REFERENCE TO RELATED APPLICATIONS[0001]This application is a divisional, and claims priority, of co-pending U.S. application Ser. No. 16 / 467,888, filed Jun. 7, 2019, which is a U.S. National Stage application, and claims priority of International Application No. PCT / US2017 / 065027, filed Dec. 7, 2017, which claims priority of U.S. Provisional Application Ser. No. 62 / 431,806, filed Dec. 8, 2016. The contents of all of the prior applications are incorporated herein by reference in their entirety.SEQUENCE LISTING[0002]This application contains a Sequence Listing that has been submitted electronically as an ASCII text file named 27527-0152002SEQ.txt. The ASCII text file, created on Nov. 3, 2021, is *4 kilobytes in size. The material in the ASCII text file is hereby incorporated by reference in its entirety.TECHNICAL FIELD[0003]This disclosure relates to bivalent compounds (e.g., bi-functional small molecule compounds) which selectively degrade and / or disrupt cyclin-dependent kinase...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): A61K31/506A61K47/55A61P35/00A61K31/519A61K45/06
CPCA61K31/506A61K47/55A61K45/06A61K31/519A61P35/00C07D401/14A61K31/44C07D417/14C07D471/04C07D487/04C12Y203/02A61K38/45
Inventor JIN, JIANYANG, XIAOBAOLIU, JINGXIONG, YANPOULIKAKOS, POULIKOSKAROULIA, ZOIWU, XUEWEIAHMED, TAMER
Owner MT SINAI SCHOOL OF MEDICINE