Probe for capturing RNAm<1>A modified binding protein and method thereof
A technology for binding proteins and probes, applied in the field of molecular biology, can solve problems such as increasing decay and reducing the stability of m6A-modified mRNA, and achieve the effects of preventing pollution, saving experimental costs and saving time.
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Embodiment 1
[0042] Embodiment 1 is used for RNAm 1 A Design Method for Probes Captured by Modified Binding Proteins
[0043] It is characterized in that, comprising the following steps:
[0044] 1) Base sequence design of the methylation probe:
[0045] 5′-biotin-ACCCGUCUUG(m 1 A) AACACGGCCGUUG(m 1 A) UCACGUC-3';
[0046] Base sequence design of control non-methylated probe:
[0047] 5′-biotin-ACCCGUCUUGAAACACGGCCGUUGAUCACGUC-3′;
[0048] 2) The sequence inserted between the 5' end of the probe and the first stem, between the 3' end and the second stem, and between the first stem and the second stem is a human genome irrelevant sequence, and the inserted The sequence is not complementary to other sequences in the probe.
[0049] The probe is composed of a base stem-loop structure, and the 3' or 5' of the probe is labeled with biotin, which can bind to the avidin on the magnetic beads; the length of the probe is 32bp; the probe The length from the 5' end of the probe to the first ste...
Embodiment 2
[0054] A kind of embodiment 2 utilizes the probe in implementing 1 to capture RNAm 1 A method of modifying the binding protein
[0055] Specific steps are as follows:
[0056] (1) Preparation of probe-magnetic bead complex: wash 80 μL streptavidin-labeled magnetic beads with 1 mL 1×TBS, remove the TBS washing solution, and then add 1 mL 1×TBS containing BSA and tRNAs to the magnetic beads, After incubation at room temperature for 30 min, the TBS solution was removed. Add 2-5μg DNA probe to the pretreated magnetic beads, add 100μL 1×TBS, 5μL 10U / μL RNase inhibitor, mix gently at 4°C for 30-60min, remove the supernatant; wash the magnetic beads with 1×TBS Beads twice to remove TBS.
[0057] (2) Extract and pretreat total cell protein: wash 2×10 with 1×PBS 7 Each cell (Raw264.7 and 293T) was centrifuged twice at 4°C and 1200rpm for 5 min each time, and the supernatant was discarded; 800 μL of pre-cooled lysis and binding buffer, 8 μL of 10 mg / mL PMSF solution, 5 μL of 10 U / μL...
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