The invention relates to the field of 
biotechnology, and provides improved identification for target 
RNA sequences bound to 
RNA-
binding protein in cells. Through UV crosslinking-immunopricipitation, target 
RNA of RNA-
binding protein is obtained, micrococcal 
nuclease is adopted for carrying out incomplete enzymolysis on the target RNA after 
ultraviolet crosslinking, after enzymolysis, a chelating agent capable of removing Ca<2+> is adopted for inactivating the 
enzyme, the 3' terminal of the target RNA obtained through the method is phosphorylated, the phosphorylated 3' terminal is ligated witha 3' RNA 
linker, then, the 
ligation product is phosphorylated, the phosphorylated 
ligation product is separated, the separated phosphorylated 
ligation product is recycled, then the 3' terminal is ligated with a 5' RNA 
linker, RT-PCR amplification is carried out, so that a 
cDNA library corresponding to the target RNA is obtained. With the technical scheme provided by the invention, the experiment flow is simplified, the step of 
isotope labelling is eliminated, due to the adding of an IgG 
antibody negative control sample, the influences of non-specific binding and background on the experimentalresult are eliminated, and the data result with the quality equal to that of Clip-seq is obtained.