Reagent for assisting identification of arabis mosaic virus and application thereof
An auxiliary identification and leaf virus technology, which is applied in the determination/inspection of microorganisms, DNA/RNA fragments, fluorescence/phosphorescence, etc., can solve the problems of complicated ELISA technology operation steps, expensive electron microscope technology equipment, prone to false positives, etc. Broad application range and prospects, avoid false positive results, reduce the effect of false positive results
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Embodiment 1
[0035] Embodiment 1, the preparation of reagent
[0036] 1. Design of primers and probes
[0037] Three primers (two upstream primers ArMVF1, ArMVF2 and one downstream primer ArMVR) and one Taqmam probe (ArMVP) were designed according to the conserved region of the polyprotein gene sequence in the A. thaliana mosaic virus genome in the American NCBI nucleic acid database. .
[0038] 2. Composition of reagents
[0039] 1. Composition of Reagent A
[0040] Reagent A consists of ArMVF1, ArMVR and ArMVP (primers and probes were synthesized by Shanghai Sangon).
[0041] ArMVF1 (upstream primer): 5'-TGCTGAGTTTGAGGCAGCAA-3' (sequence 1 of the sequence listing);
[0042] ArMVR (downstream primer): 5'-CAGTGGTGGGATGGTCAGAAA-3' (sequence 2 of the sequence listing);
[0043] ArMVP (probe): 5'(FAM)-CGACTTTGCCAGCCTAGATGCAG-(TAMRA)3'; (The nucleotide sequence is sequence 4 of the sequence listing, the 5' end is labeled with the reporter fluorescent dye FAM, and the 3' end is labeled wit...
Embodiment 2
[0051] Embodiment 2, the application of reagent
[0052] Infected with four viruses (ArMV, PVX, TBRV and PVY) N ) of potato leaves, healthy potato leaves were taken as a control, and reagent A and reagent B prepared in Example 1 were used for specificity determination and sensitivity determination respectively, and the amplification efficiencies of reagent A and reagent B were compared.
[0053] 1. Determination of specificity of reagents
[0054] 1. Total RNA extraction and quality control
[0055] Total RNA was extracted from leaves infected with each virus (4 species) and healthy leaves (CK1) with a plant total RNA extraction kit. Use the nucleic acid protein analyzer BioPhotometer to measure its OD value, get its concentration and purity value, and use this to control the quality of nucleic acid.
[0056] 2. Reverse transcription to synthesize cDNA
[0057] The total RNA extracted from the five kinds of leaves in step 1 was reverse-transcribed with a reverse transcript...
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