Kit for RT-PCR typing detection of chicken infectious bronchitis virus
A technology of RT-PCR and bronchitis, applied in the field of chicken infectious bronchitis virus RT-PCR typing detection kit, can solve the problems of prevention and control difficulties, and achieve high sensitivity, strong specificity, convenient and quick use Effect
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Embodiment 1
[0054] [Example 1] RNA extraction
[0055] 1 Detection sample processing
[0056] Tissue sample processing: Take the tissues that are easy to separate IBV, such as the trachea and kidney of dead chickens, cut them into pieces with scissors, add sterile PBS at a volume ratio of 1:3, and grind them thoroughly. The homogenized tissue suspension was repeatedly frozen and thawed at -20°C (or lower)-room temperature for 3 times, then centrifuged at 12,000g for 10min, and 200μl of the supernatant was taken into a new sterilized centrifuge tube.
[0057] Processing of swab samples: Add 1ml of sterilized PBS to a fresh pharyngeal or cloacal swab, shake and stir well, then discard the swab (collect the liquid in the swab as much as possible). Centrifuge the extract at 12,000 g for 10 min, and take 200 μl of the supernatant into a new sterilized centrifuge tube.
[0058] Allantoic fluid treatment: collect virus-infected chick embryo allantoic fluid and centrifuge at 12,000 g for 10 min...
Embodiment 2
[0061] [Example 2] Reverse transcription reaction (RT reaction)
[0062] Take 1 μg of the above total RNA and add 1 μl Random primer, then add DEPC water to 12 μl. After ice bathing at 65°C for 5 minutes, add 4 μl 5×buffer, 2 μl 10mM dNTP, 1 μl RNase inhibitor, 1 μl M-MuLV to the system, mix well, and then perform RT reaction at 25°C for 5 minutes, 42°C for 1h, and 70°C for 5 minutes. Finally, the reverse transcription product was obtained. The concentration of reverse transcription products was also measured by UV spectrophotometer. Store at -20°C for later use.
Embodiment 3
[0063] [Example 3] PCR reaction
[0064] 1. Primer Design
[0065] The S1 gene sequences of 400 representative IBV strains recorded in GeneBank were selected for comparative analysis. According to the results of the comparison analysis, its conserved sequence was selected, and a pair of IBV general primers (general-F and general-R) and 4 / 91 type strain-specific identification primers (4 / 91- F and 24 / 91-R); in order to further identify respiratory and renal IBV, the full sequences of 30 classic IBV strains recorded on GENBANK were selected (including respiratory strains such as H120, M41, H52, and BJ, SC021202, GX-YL5 and other nephrotype strains) were compared, and a phylogenetic tree was drawn based on the S1 gene sequence. Typed according to the distant relationship of the phylogenetic tree, selected the conserved sequence of the nsp12 gene of the nephrotype strain and designed a pair of identification primers (kidney-F and nephrotype-R) of the nephrotype strain. The prim...
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