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Application of Improved Partial Least Squares Regression Method in Microbial Culture Medium Optimization

A microbial culture medium and partial least squares technology, applied in the application field of multivariate statistical methods, can solve the problems of poor prediction accuracy, unreliable prediction of data, and large number of latent variables extracted from mixed noise, etc., to achieve the effect of establishing simplicity

Active Publication Date: 2022-01-04
XINXIANG MEDICAL UNIV
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Problems solved by technology

[0003] However, on the other hand, PLSR often shows a tendency of overfitting, which is caused by the large number of latent variables for extracting confounding noise.
Overfitting is a statistical phenomenon, which generally means that the modeling data can be perfectly fitted, but the newly added data cannot be reliably predicted, that is, the fitting accuracy is high but the prediction accuracy is poor

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  • Application of Improved Partial Least Squares Regression Method in Microbial Culture Medium Optimization
  • Application of Improved Partial Least Squares Regression Method in Microbial Culture Medium Optimization
  • Application of Improved Partial Least Squares Regression Method in Microbial Culture Medium Optimization

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Embodiment Construction

[0027] The technical solution of the present invention will be described in further detail below in conjunction with the accompanying drawings and specific embodiments.

[0028] Example Using an improved PLSR-based medium optimization strategy to improve the ethanol tolerance of Clostridium thermocellum

[0029] 1. Experimental materials and measurement methods. Clostridium thermocellum ATCC35609 resistant strain (tolerance to 3% (V / V) exogenous ethanol), GS-2 medium is the initial medium, culture method: 60 ℃ anaerobic (filled with 10% CO 2 ,5%H 2 and 85%N 2 Maintain anaerobic environment) static culture, after culturing for 48 hours, use turbidimetry to measure bacterial biomass, use high performance chromatography (HPLC) to measure sugar consumption, fermentation broth acetic acid concentration, lactic acid concentration and ethanol concentration, and use acidity meter to measure The pH drop of the fermentation broth.

[0030] 2. Uniformly designed experiments. Accordi...

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Abstract

The invention discloses the application of an improved partial least squares regression method in the optimization of microbial culture medium, and integrates the technology of cross-validation and variable screening to reduce the potential over-fitting problem of PLSR, that is, first extract the Appropriate number of latent variables, and then use the variable screening method based on the variable projection importance technology combined with the robust criterion of the coefficient of determination of the regression model to establish a model that is simple, robust, and especially high in prediction accuracy. The VIP regression model proposed by the present invention establishes the validity of the simple, robust and high-prediction model. Can be promoted further.

Description

technical field [0001] The invention relates to the application of a multivariate statistical method, in particular to an application method of an improved partial least square regression method in the optimization of microbial culture medium. Background technique [0002] Partial least squares regression (PLSR) is a new type of multivariate statistical method because it combines the advantages of multiple linear regression, principal component analysis and canonical correlation analysis. Studies have shown that PLSR is good at dealing with multicollinearity that cannot be solved by conventional linear regression. , small samples, etc., and can use limited data to perform regression operations of multiple independent variables on multiple dependent variables at the same time. [0003] On the other hand, however, PLSR often exhibits a tendency to overfit due to the large number of latent variables that extract confounding noise. Overfitting is a statistical phenomenon, which...

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G16B5/20G16B40/00G06N3/12
CPCG06F30/20
Inventor 赵文慧赵长虹朱新术周晨妍张文博蔡刘滕
Owner XINXIANG MEDICAL UNIV
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