Diagnostic methods and devices
A technology of reservoirs and detectors, applied in the field of diagnosis and devices
- Summary
- Abstract
- Description
- Claims
- Application Information
AI Technical Summary
Problems solved by technology
Method used
Image
Examples
specific example
[0190]As used herein, "thermosensitive polymer" or "temperature responsive polymer" refers to a polymer or combination of polymers that exhibit a drastic and discontinuous change in their physical properties with temperature. Specifically, the temperature-sensitive polymer may be a polymer that exhibits a change in solubility in water or an aqueous solution with temperature. Specific examples include: poly(styrenesulfonate) (PSS), poly(diallyldimethylammonium chloride) (PDADMAC), poly(allylamine) (PAH), poly(N-isopropylpropylene amide), poly[2-(dimethylamino)ethyl methacrylate] (pDMAEMA), hydroxypropyl cellulose, poly(vinyl caprolactam) and polyvinyl methyl ether.
[0191] The following examples are provided and should not be construed as limiting the scope of the claims.
Embodiment 1
[0193] Example 1 - Development of blocking and detection probes for BRAF mutation detection.
[0194] Mutations in the BRAF gene are found in more than 45% of melanomas, of which as many as 80% are the single-base mutation T1799A(V600E). It is believed that detection of this BRAF mutation status is a reliable surrogate for tumor testing.
[0195] To detect BRAF mutation status, two probes were developed:
[0196] 1) A blocking probe, complementary to the antisense strand of the mutant DNA sequence of interest; after heat denaturation of double-stranded DNA (dsDNA), this probe preferentially binds to the antisense strand of the mutant DNA sequence.
[0197] The blocking probes are short and provided in excess such that binding kinetics greatly favor blocking probe: formation of the antisense strand rather than reannealing of the mutant sequence dsDNA. This results in enrichment of the sense strand of the mutant DNA sequence for subsequent detection by the device.
[0198] 2)...
Embodiment 2
[0201] EXAMPLE 2 - COMPUTER MODELING OF INDICATE DEVICE CHARACTERISTICS.
[0202] In order to optimize the functional characteristics of the device, the INDICATE device was simulated in silico using computational modeling.
[0203] First, the individual mathematical equations responsible for the individual components are defined, and then proceed using a genetic algorithm (GA) (Goldberg and Deb, 1991, Foundations of Genetic Algorithms In Foundations of Genetic Algorithms, G.J.E. Rawlins ed. Morgan Kaufmann, San Mateo, CA) combination. Said techniques are well established in optimizing the design of plasmonic devices (Sukharev and Seideman, Nano Lett, 2006, Vol. 6, No. 4, pp. 715-719).
[0204] Simulations were used to optimize the devices with respect to: 1) high sensitivity (ie, low false negative rate); 2) high signal-to-noise ratio; and 3) high amplification of the input signal. Analysis was performed using Matlab Numerical Calculation (MathWorks) and the multiphysics met...
PUM
| Property | Measurement | Unit |
|---|---|---|
| diameter | aaaaa | aaaaa |
| diameter | aaaaa | aaaaa |
| diameter | aaaaa | aaaaa |
Abstract
Description
Claims
Application Information
Login to View More 


