A pathogenic mutation of Leber's congenital amaurosis and its detection reagent
A detection reagent and congenital technology, applied in the field of Leber's congenital amaurosis pathogenic mutations and its detection reagents, can solve the problem of screening out pathogenic genes, unreported or confirmed, difficult to analyze small families and sporadic Cases and other issues to achieve the effect of auxiliary clinical diagnosis
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Embodiment 1
[0055] A family with Leber congenital amaurosis (LCA) with a history of consanguineous marriage was tested for mutations in the IFT52 gene.
[0056] experimental method:
[0057] 1. Collection of clinical resources of the family and establishment of a genetic resource bank:
[0058] The clinical data and blood samples of each member of the family were collected, see the family diagram figure 1 . Clinical data mainly include personal medical history, family history, best corrected visual acuity (BCVA), slit lamp examination, fundus photography, optical coherence tomography (OCT), full field electrophysiological examination (full field field electroretinography (ERG), fundus fluoresceinangiography (FFA), oral panoramic X-ray film, pure tone audiometry, cranial magnetic resonance, etc. The blood genome DNA of each family member was extracted with a blood genome DNA extraction kit (Qiagen, Hilden, Germany).
[0059] 2. Discover the pathogenic mutations in this family with the ...
Embodiment 2
[0089] A functional study was conducted on the pathogenic mutation IFT52 p.T186A detected in Example 1.
[0090] experimental method:
[0091] 1. Conservative analysis:
[0092] Using NCBI HomoloGene database ( http: / / www.ncbi.nlm.nih.gov / homologene ) Conservative evaluation and prediction of the screened mutations in multiple species.
[0093] 2. Predict the pathogenicity of mutations based on SIFT and PolyPhen values:
[0094] Two mainstream online prediction software are used: SIFT Human Protein DB (http: / / sift.bii.a-star.edu.sg / ) and PolyPhen-2 (Polymorphism Phenotyping, version 2; http: / / genetics.bwh.harvard.edu / pph2 / ), to predict the impact of missense mutations on protein levels, thereby predicting the pathogenicity of mutations.
[0095] 3. Research on protein crystal structure changes:
[0096] SWISS MODEL (http: / / swissmodel.expasy.org / ) prediction software was used to predict the structures of the IFT52 wild-type protein and the mutant protein carrying the...
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