Looking for breakthrough ideas for innovation challenges? Try Patsnap Eureka!

Method and application of protein thermal stability measurement combined with bidirectional stable isotope labeling proteomics screening drug targets

A technology of isotope labeling and stable isotope, which is applied in the field of drug target protein screening, can solve the problems of small detection range, low detection accuracy, and difficult experimental verification, and achieve high-precision identification, improved accuracy, and low accuracy.

Active Publication Date: 2022-02-25
JINAN UNIVERSITY
View PDF4 Cites 0 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0006] Due to the small detection range and low detection accuracy of the existing technology in the search for small molecule drug targets, a variety of potential target proteins cannot be presented globally, which brings great difficulties to later experimental verification. It is very necessary to find a A high-throughput, high-precision drug target identification method
But so far, in the field of identifying the target protein of a specific small molecule drug, no research team has used the protein thermal stability change measurement technology combined with the quantitative proteomics of forward-reverse isotope labeling.

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Method and application of protein thermal stability measurement combined with bidirectional stable isotope labeling proteomics screening drug targets
  • Method and application of protein thermal stability measurement combined with bidirectional stable isotope labeling proteomics screening drug targets
  • Method and application of protein thermal stability measurement combined with bidirectional stable isotope labeling proteomics screening drug targets

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0065] Taking human lung adenocarcinoma A549 cells as a model, taking p38 MAPK small molecule inhibitor SB202190 as an example, verify the feasibility and advantages of the technical solution of the present invention, the flow chart is as follows figure 1 As shown, the specific steps are as follows:

[0066] 1. First, use SILAC cell culture medium (SILAC cell culture medium is cell culture medium containing heavy chain isotope (Arg10, Lys8) and cell culture medium containing light chain isotope labeled amino acid (Arg0, Lys0) to treat A549 cells (ATCC, Manassas) respectively , VA, USA) for heavy chain labeling and light chain labeling culture; wherein, the SILAC metabolic labeling system was purchased from Thermo Fisher Scientific, Rockford, United States [that is, the kit of Thermo Fisher Scientific: the kit includes heavy chain isotopes (Arg10, Lys8) labeled amino acids (Cat. No.: 89990 and 88209), containing light chain isotope (Arg0, Lys0) labeled amino acids, SILAC-specif...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

PUM

No PUM Login to View More

Abstract

The invention discloses a method and application of protein thermal stability measurement combined with bidirectional stable isotope labeling proteomics screening drug targets. This method uses the quantitative method of forward-reverse isotope labeling combined with the measurement technology of protein thermal stability change, which can globally identify the target protein that interacts with the drug by observing which proteins in the cell undergo thermodynamic changes under the package of the drug . The method of the present invention overcomes the shortcomings of the high false positive rate of traditional identification methods, and has the characteristics of high throughput, high depth, high precision, wide detection range, and short time-consuming, breaking the limitations of the prior art in drug target identification It provides strong support for drug target research.

Description

technical field [0001] The invention belongs to the field of drug target protein screening, in particular to a method and application of protein thermal stability measurement combined with bidirectional stable isotope labeling proteomics screening drug targets. Background technique [0002] The specific binding of small molecule drugs to target proteins under physiological conditions (Drug Target Interaction) is the key to the successful treatment of diseases. Identifying the specific target protein of the drug and analyzing the molecular mechanism of the drug are important tasks throughout all stages of drug development, and are also the core content of drug preclinical research. However, under physiological conditions, a single small-molecule drug may have multiple target proteins in vivo, so a comprehensive identification of binding proteins of small-molecule drugs is helpful for the promotion of clinical application of drugs and the evaluation of their side effects. [...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to View More

Application Information

Patent Timeline
no application Login to View More
Patent Type & Authority Patents(China)
IPC IPC(8): G01N33/58G01N33/68
Inventor 何庆瑜汪洋张静梁钧泽
Owner JINAN UNIVERSITY
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Patsnap Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Patsnap Eureka Blog
Learn More
PatSnap group products