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Engineered yeast cells and uses thereof

a technology of yeast cells and lysates, applied in the field of engineered yeast cells, can solve the problems of insufficient conventional means for obtaining organic or protein molecules, complex organic synthesis, and the need for toxic solvents for extraction of organic compounds from biological materials, and achieve the effect of reducing the expression of nucleic acids

Inactive Publication Date: 2013-05-09
CALIFORNIA INST OF TECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0007]Accordingly, the invention provides a method for regulating the production of a protein of interest in yeast. In certain embodiments, the method includes providing a yeast cell with a mutation in the GAL2 gene; the yeast cell contains a nucleic acid encoding a protein operably linked to a GAL-responsive promoter, and the protein regulates the production of a compound of interest. The method further comprises contacting the cell with a molecule that the promoter responds to, such as for example a galactose or an analog thereof, and increases the expression of the protein from the nucleic acid (that is, the promoter is an inducible or activatable promoter with respect to the molecule). Thus, contacting the cell with a greater amount of the molecule leads to a greater amount of expression of the protein from the nucleic acid, thereby regulating the production of the compound of interest.

Problems solved by technology

Conventional means for obtaining organic or protein molecules are often insufficient.
Organic synthesis is usually complex since several steps are required to obtain the desired product.
Furthermore, these steps often involve the use of toxic solvents, which require special handling and disposal.
Extraction of organic compounds from biological materials may also require toxic solvents.
In addition, extraction and purification methods usually provide a low yield of the desired compound, as biological materials typically contain only small quantities of these compounds.
Many of these systems, however, lack the ability to regulate the expression of the desired compound.
The inability to regulate gene expression in these inducible promoter systems can present problems such as toxicity, due to overproduction of the expressed compound.
The inability to readily produce large quantities of many biological compounds has limited their practical use in areas such as drug production.

Method used

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  • Engineered yeast cells and uses thereof
  • Engineered yeast cells and uses thereof
  • Engineered yeast cells and uses thereof

Examples

Experimental program
Comparison scheme
Effect test

example 1

Regulation of the Gal Network in Galactose Permease-Deficient Cells

Galactose Permease Deletion Results in a Linear Induction Response

[0072]Galactose is transported into the cell through both an induced high-affinity and low-affinity transport mechanism and an uninduced facilitated diffusion mechanism. The response of the GAL network was determined when the outermost positive feedback loop controlling the autocatalytic expression of the galactose permease Gal2p was removed. Initial studies examined the response of the network in the absence of the induced transport response. A GAL2deletion strain was constructed by inserting a kanamycin resistance marker into the GAL2locus of the chromosome. This system enabled the examination of the network response under conditions where the transport of galactose is limiting. Transcriptional activation, or the level of Gal4p not bound by Gal80p, in both the gal2Δ and the wild-type strain was determined by measuring fluorescence levels in cells har...

example 2

Examination of the Role of the Gal1p Galactokinase on the Response of the Gal Network

Galactokinase Deletion Results in a Regimed Network Response

[0077]The previous examples indicate that the nested positive and negative feedback loops in the GAL network influence the steady-state induction response to varying levels of galactose. The galactokinase Gal1p is also anticipated to play a key regulatory role in the response of the network as a result of its two distinct activities. The immediate role of this enzyme is in converting galactose into an energy source for the cell. Therefore, it is anticipated that removal of this activity will increase the overall response of the network at a given galactose concentration as the intracellular levels of galactose available for activating Gal3p will be effectively higher. Prior work has demonstrated higher fully induced response levels in a Gal1p knockout strain (Stagoj et al. (2005) FEMS MicrobioL Lett. 244, 105-110). However, the galactokinas...

example 3

Modifications in the Gal Network Affect Cell Population Homogeneity

Population Distributions in GAL2-Modified Strains Exhibit Graded Responses

[0079]Alteration of the regulatory schemes at various control points modifies the steady-state population-averaged response of the GAL network. The effects of these targeted alterations on the population response of the network were determined. Flow cytometry was used to analyze the response of the cell population to alterations in Gal2p regulation. Wild-type, gal2Δ, and tetO2:GAL2cells were cultured under the same conditions as the population-averaged studies prior to preparation for analysis. The wild-type strain exhibited two distinct populations of fully induced and uninduced cells (FIG. 5A). In accordance with the all-or-none effects observed in other inducible promoter systems (Louis et al. (2002) Sci. STKE 2002, PE33), the percentage of fully induced cells increases with increasing galactose concentrations. While both GAL2-modified strai...

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Abstract

The present application provides engineered yeast cells and uses thereof. In specific embodiments, the yeast cells have a mutation in the GAL2 gene. In specific embodiments, the yeast cells can be used for producing a protein or compound of interest.

Description

CROSS-REFERENCE TO RELATED APPLICATIONS[0001]This application claims priority to and the benefit of U.S. Provisional Application No. 60 / 683,824, filed on May 23, 2005, the content of which is hereby incorporated by reference in its entirety.BACKGROUND OF THE INVENTION[0002]Conventional means for obtaining organic or protein molecules are often insufficient. Organic compounds are often extracted from biological materials (e.g., plants, microbes, and animals) or synthesized in the laboratory. Organic synthesis is usually complex since several steps are required to obtain the desired product. Furthermore, these steps often involve the use of toxic solvents, which require special handling and disposal. Extraction of organic compounds from biological materials may also require toxic solvents. In addition, extraction and purification methods usually provide a low yield of the desired compound, as biological materials typically contain only small quantities of these compounds.[0003]Inducib...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12N15/81
CPCC12N15/81C12P21/02C12P19/34C07K14/395
Inventor SMOLKE, CHRISTINA D.HAWKINS, KRISTY
Owner CALIFORNIA INST OF TECH