Primer group, kit and method for detecting c-kit gene mutation
A detection method and primer set technology, applied in biochemical equipment and methods, recombinant DNA technology, microbial measurement/inspection, etc., can solve difficult detection, unknown and other problems, achieve high accuracy, good specificity, and improve The effect of sensitivity
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Embodiment 1
[0036] An embodiment of the primer set used for detecting c-kit gene mutation of the present invention, the primer set used for detecting c-kit gene mutation described in this example is shown in Table 2.
[0037] Table 2 Primer Sequence
[0038]
[0039]
[0040] Note: A in the primers represents the first-round amplification primer of nest-PCR, and B represents the nest primer in nest-PCR.
[0041] Using the primers in Table 1 can specifically amplify the corresponding exon fragments. Further, the primer set described in this embodiment for detecting c-kit gene mutation also includes the following sequencing primers: TGTAAAACGACGGCCAGT (upstream primer, shown in SEQ ID NO: 17) and CAGGAAACAGCTATGACC (downstream primer, shown in SEQ ID NO: 18) Show).
Embodiment 2
[0043] An embodiment of the test kit for detecting c-kit gene mutation of the present invention, the test kit for detecting c-kit gene mutation described in this embodiment includes the c-kit gene mutation described in embodiment 1 Primer set, DNA extraction reagent, DNA polymerase, buffer solution, MgCl 2 and agarose gel; wherein, the DNA extraction reagent comes from the FFPE tissue DNA extraction kit; the preparation method of the agarose gel is: take a sufficient amount of agarose, put it into a 200mL conical flask, add a certain amount of TAE Buffer solution (1×), heat in a microwave oven (SMC, J180) at medium-high heat for 3 minutes or boil until the solution is clear, cool to about 65°C at room temperature, pour into another dedicated 100mL conical flask, add acridine orange 3~ 5 μL, pour the gel, insert the tooth comb, and cool at room temperature for 10-15 minutes to obtain the agarose gel; the preparation method of the 50×TAE buffer solution used is: mix 242g Tris, 5...
Embodiment 3
[0045] An embodiment of the detection method of the c-kit gene mutation of the present invention, the detection method of the c-kit gene mutation described in this embodiment adopts the kit described in Example 2, and the specific method steps are as follows:
[0046] 1. DNA extraction: use FFPE tissue DNA extraction kit to extract the DNA in the sample to be tested;
[0047] 2. Use the primer set in Table 2 as a primer to take out Q5 TM Hot Boot Ultra Fidelity 2 x Master Mix, ddH 2 0, after melting at room temperature, briefly centrifuge to prepare a PCR amplification system as shown in Table 3 (the main purpose of adding DMSO in the amplification system is to increase specific amplification; the template in Table 3 is added in step 3); After a brief centrifugation, aliquot 23.0 μL to each PCR reaction tube;
[0048] Table 3 PCR reaction system
[0049]
[0050] 3. Add 2.0 μL (6.25-200ng) of template to the PCR reaction tube, cover the cap, shake and mix well, and perfo...
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