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Nanoparticles having oligonucleotides attached thereto and uses therefor

a technology of oligonucleotides and nanoparticles, which is applied in the field of detecting analytes, can solve the problems of low activity, time-consuming and/or expensive equipment, and complex methods, and achieves the effects of facilitating binding, facilitating the movement of nanoparticles, and significantly higher sequence selectivity of nanoparticle labeled arrays

Inactive Publication Date: 2006-03-30
NORTHWESTERN UNIV +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

The patent describes a method for detecting nucleic acids using nanoparticles with oligonucleotides attached. The nanoparticles have oligonucleotides that are complementary to a portion of the nucleic acid, allowing them to hybridize with the nucleic acid. The hybridization results in a detectable change. The method can involve contacting the nucleic acid with a substrate having the oligonucleotides attached, and then contacting it with different types of nanoparticles having oligonucleotides attached. The detectable change can be observed. The method can be used for detecting nucleic acids in a sample.

Problems solved by technology

However, these methods are complicated, time-consuming and / or require the use of specialized and expensive equipment.
The complexes produced in this manner are functional but suffer from several drawbacks: e.g., some of the protein desorbs on standing, liberating antibody into solution that competes with adsorbed antibodies for the antigen target; the activity is low since the amount adsorbed is low and some of the antibody denatures on adsorption; and the protein-coated particles are prone to self aggregation, especially in solutions of high ionic strength.
Work with these nanoparticle is limited by the poor water solubility of many proteins, which limits the range of protein-nanoparticle conjugates that can be utilized effectively.
The drawbacks of this method are that the process is difficult to control and the assemblies are formed irreversibly.
However, the theory of producing DNA structures is well ahead of experimental confirmation.

Method used

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  • Nanoparticles having oligonucleotides attached thereto and uses therefor
  • Nanoparticles having oligonucleotides attached thereto and uses therefor
  • Nanoparticles having oligonucleotides attached thereto and uses therefor

Examples

Experimental program
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example 1

Preparation of Oligonucleotide-Modified Gold Nanoparticles

A. Preparation of Gold Nanoparticles

[0358] Gold colloids (13 nm diameter) were prepared by reduction of HAuCl4 with citrate as described in Frens, Nature Phys. Sci., 241, 20 (1973) and Grabar, Anal. Chem., 67, 735 (1995). Briefly, all glassware was cleaned in aqua regia (3 parts HCl, 1 part HNO3), rinsed with Nanopure H2O, then oven dried prior to use. HAuCl4 and sodium citrate were purchased from Aldrich Chemical Company. Aqueous HAuCl4 (1 mM, 500 mL) was brought to reflux while stirring. Then, 38.8 mM sodium citrate (50 mL) was added quickly. The solution color changed from pale yellow to burgundy, and refluxing was continued for 15 min. After cooling to room temperature, the red solution was filtered through a Micron Separations Inc. 1 micron filter. Au colloids were characterized by UV-vis spectroscopy using a Hewlett Packard 8452A diode array spectrophotometer and by Transmission Electron Microscopy (TEM) using a Hitac...

example 2

Formation Of Nanoparticle Aggregates

A. Preparation of Linking Oligonucleotide

[0367] Two (nonthiolated) oligonucleotides were synthesized as described in part B of Example 1. They had the following sequences:

3′ ATATGCGCGA TCTCAGCAAA;[SEQ ID NO:1] and3′ GATCGCGCAT ATCAACGGTA.[SEQ ID NO:2]

[0368] Mixing of these two oligonucleotides in a 1 M NaCl, 10 mM phosphate buffered (pH 7.0) solution, resulted in hybridization to form a duplex having a 12-base-pair overlap and two 8-base-pair sticky ends. Each of the sticky ends had a sequence which was complementary to that of one of the oligonucleotides attached to the Au colloids prepared in part C of Example 1.

B. Formation of Nanoparticle Aggregates

[0369] The linking oligonucleotides prepared in part A of this example (0.17 μM final concentration after dilution with NaCl) were added to the nanoparticle-oligonucleotide conjugates prepared in part C of Example 1 (5.1 nM final concentration after dilution with NaCl) at room temperature. The...

example 3

Preparation of Oligonucleotide-Modified Gold Nanoparticles

[0377] Gold colloids (13 nm diameter) were prepared as described in Example 1. Thiol-oligonucleotides [HS(CH2)6OP(O)(O−)-oligonucleotide] were also prepared as described in Example 1.

[0378] The method of attaching thiol-oligonucleotides to gold nanoparticles described in Example 1 was found not to produce satisfactory results in some cases. In particular, when long oligonucleotides were used, the oligonucleotide-colloid conjugates were not stable in the presence of a large excess of high molecular weight salmon sperm DNA used as model for the background DNA that would normally be present in a diagnostic system. Longer exposure of the colloids to the thiol-oligonucleotides produced oligonucleotide-colloid conjugates that were stable to salmon sperm DNA, but the resulting conjugates failed to hybridize satisfactorily. Further experimentation led to the following procedure for attaching thiol-oligonucleotides of any length to ...

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Abstract

The invention provides methods of detecting a nucleic acid. The methods comprise contacting the nucleic acid with one or more types of particles having oligonucleotides attached thereto. In one embodiment of the method, the oligonucleotides are attached to nanoparticles and have sequences complementary to portions of the sequence of the nucleic acid. A detectable change (preferably a color change) is brought about as a result of the hybridization of the oligonucleotides on the nanoparticles to the nucleic acid. The invention also provides compositions and kits comprising particles. The invention further provides methods of synthesizing unique nanoparticle-oligonucleotide conjugates, the conjugates produced by the methods, and methods of using the conjugates. In addition, the invention provides nanomaterials and nanostructures comprising nanoparticles and methods of nanofabrication utilizing nanoparticles. Finally, the invention provides a method of separating a selected nucleic acid from other nucleic acids.

Description

[0001] This application is a continuation-in-part of pending application Ser. No. 09 / 927,777, filed Aug. 10, 2001, which is a continuation-in-part of Ser. No. 09 / 820,279, filed Mar. 28, 2001 which is a continuation-in-part of application Ser. No. 09 / 760,500, filed Jan. 12, 2001, which is a continuation-in-part of Ser. No. 09 / 603,830, filed Jun. 26, 2000, which is a continuation-in-part of application Ser. No. 09 / 344,667, filed Jun. 25, 1999, which was a continuation-in-part of pending application Ser. No. 09 / 240,755, filed Jan. 29, 1999, which was a continuation-in-part of pending PCT application PCT / US97 / 12783, which was filed Jul. 21, 1997, which are incorporated by reference. Benefit of provisional applications Nos. 60 / 031,809, filed Jul. 29, 1996; 60 / 176,409, filed Jan. 13, 2000; 60 / 192,699, filed Mar. 28, 2000; 60 / 200,161, filed Apr. 26, 2000; 60 / 213,906, filed Jun. 26, 2000; 60 / 224,631, filed Aug. 11, 2000; 60 / 254,392, filed Dec. 8, 2000; 60 / 254,418, filed Dec. 8, 2000; 60 / 255...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): C12Q1/70C12Q1/68B82B1/00C07B61/00C07H21/00C40B40/06
CPCB01J2219/00274Y10S977/924B01J2219/00585B01J2219/00596B01J2219/00603B01J2219/00648B01J2219/00653B01J2219/00659B01J2219/00702B01J2219/00722B82B1/00B82Y15/00B82Y30/00C07B2200/11C07H21/00C12Q1/6816C12Q1/6825C12Q1/6827C12Q1/6834C12Q1/6837C40B40/06B01J2219/005C12Q2563/155C12Q2563/143C12Q2537/143C12Q2525/197C12Q2525/161C12Q2565/625C12Q2537/125C12Q2565/519C12Q2565/515
Inventor MIRKIN, CHADLETSINGER, ROBERTMUCIC, ROBERTSTORHOFF, JAMESELGHANIAN, ROBERTTATON, THOMASGARIMELLA, VISWANADHAMLI, ZHIPARK, SO-JUNGLU, GANG
Owner NORTHWESTERN UNIV
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