The invention provides an SSR (Simple Sequence Repeat) molecular marker for a thoracic window, which is characterized in that the SSR molecular marker comprises one or more of 13 groups of SSR molecular markers, and the serial numbers of the 13 groups of SSR molecular markers are SSR308, SSR311, SSR313, SSR319, SSR320, SSR323, SSR324, SSR325, SSR405, SSR406, SSR501, SSR503 and SSR504 respectively; the nucleotide sequences of the 13 groups of SSR molecular marker sites are as shown in SEQ ID NO. 1 to 13. According to the SSR molecular marker disclosed by the invention, a technical system is established, so that the blank of the specific molecular marker of the scirpus juncoides is filled, the SSR molecular marker can be used for identifying and analyzing firefly offspring paternal right, genetic diversity, population genetics and germplasm, and a result can be used for sex selection and evolution research of a scirpus juncoides insect; and evaluating artificial feeding, rejuvenation and protection of the scirpus juncoides.