Kit for detecting staphylococcus epidermidis
A Staphylococcus epidermidis and kit technology, applied in the direction of microorganism-based methods, microorganism measurement/inspection, biochemical equipment and methods, etc., can solve problems such as high cost, delay in disease treatment, lack of specific primers, etc., and achieve high Effects with specificity and low equipment requirements
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Embodiment 1
[0016] Embodiment 1: Staphylococcus rpoB gene sequence alignment
[0017] Such as figure 1 As shown, in the rpoB gene sequence of Staphylococcus epidermidis, the 5' end of the guide RNA sequence (selected part) of the present invention is the PAM structure of TTTN. The guide RNA sequence does not have a completely consistent sequence in Staphylococcus aureus, Staphylococcus human, Staphylococcus wahlschii, Staphylococcus capitus, and Staphylococcus hemolyticus, and all have several base differences. In addition, there is no PAM structure of TTTN at the 5' end of the homologous sequence in Staphylococcus aureus, Staphylococcus human, Staphylococcus wattleri, Staphylococcus capitus, and Staphylococcus hemolyticus. Therefore, Cas12a protein cannot target with this guide RNA. To Staphylococcus aureus, Staphylococcus hominis, Staphylococcus worthii, Staphylococcus capitis, Staphylococcus hemolyticus, therefore, only Staphylococcus epidermidis can show positive reaction during dete...
Embodiment 2
[0018] Embodiment 2: The guide RNA specificity determination of the present invention, the steps are as follows:
[0019] (1) Prepare standard strains of Staphylococcus epidermidis, Staphylococcus aureus, Staphylococcus hominis, Staphylococcus worbachii, Staphylococcus capitis, Staphylococcus hemolyticus;
[0020] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;
[0021] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmp basickit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQNo.3), 0.375 μl Ribonuclease Inhibitor (Takara company), 3.5 μl buffer2.1 (NEB company), 1000nM guide RNA (sequence is SEQ No.1), 250nM Cas12a (NEB company), 200nM single-stranded DNA probe Needle (Shanghai Sangong), add water to make up to 25μl;
[0022] (4) React at a constant temperature of 37 degrees Cels...
Embodiment 3
[0025] Embodiment 3: the detection method based on guide RNA described in the present invention and traditional PCR method specificity and experimental time-consuming comparison
[0026] 1. based on the detection method of guide RNA described in the present invention, the steps are as follows:
[0027] (1) Prepare standard strains of Staphylococcus epidermidis, Staphylococcus aureus, Staphylococcus hominis, Staphylococcus worbachii, Staphylococcus capitis, Staphylococcus hemolyticus;
[0028] (2) Take 1ml of the sample to be tested, heat it at 98 degrees Celsius for 5min, and draw 1μl as the test sample;
[0029] (3) Prepare the reaction system, the reaction system is 25 μl, including 1 μl detection sample, 14.75 μl hydrated TwistAmp basickit reaction drying ball (TwistDx company), 0.9 μl 10mM RPA-F (sequence is SEQ No.2) and RPA-R ( Sequence is SEQNo.3), 0.375 μl Ribonuclease Inhibitor (Takara company), 3.5 μl buffer2.1 (NEB company), 1000nM guide RNA (sequence is SEQ No.1),...
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