Rutaceae multi-species codon using mode analysis method and system

A pattern analysis and codon technology, applied in the field of codon usage pattern analysis methods and systems of Rutaceae species, can solve problems such as single codon data analysis and analysis methods
CN110400604AActive Publication Date: 2019-11-01INST OF COMPUTING TECH CHINESE ACAD OF SCI
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Patent Information

Authority / Receiving Office
CN Β· China
Patent Type
Applications(China)
Current Assignee / Owner
INST OF COMPUTING TECH CHINESE ACAD OF SCI
Publication Date
2019-11-01

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Abstract

The invention relates to a rutaceae multi-species codon using mode analysis method which comprises the steps of acquiring codon subsequence of each species through gene data of multiple rutaceae species; extracting a first characteristic value of the codon sequence, and verifying an evolution relation of the multiple species according to the relation of the first characteristic value; extracting asecond characteristic value of the codon sequence, and drawing a characteristic relation graph according to the second characteristic value for verifying the evolution conservatism degree of the species; extracting a high-frequency codon / condon pair in the condon sequence, and verifying the evolution conservatism correlation degree of the multiple species according to the relation of the high-frequency condon / condon pair; clustering the codon RSCU value of the codon sequence and the codon RSCU value of plan species, and verifying the affiliated class and order of the species according to a clustering result; and acquiring an Euclidean distance between the GC3 contents of the codon sequence, thereby verifying the relationship of the multiple species.
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Description

technical field

[0001] The invention belongs to the field of biological gene data analysis systems, and in particular relates to a codon usage pattern analysis method and system for Rutaceae species. Background technique

[0002] As gene sequencing technology becomes more and more mature, more and more industries analyze genetic data for diagnosis, identification, prediction and other work. Codons are composed of three adjacent bases on the mRNA, which determine the type and sequence of amino acids for protein synthesis. Therefore, since Paul M. Sharp and Wen-Hsiung Li began to analyze single-cell code usage patterns, more and more animals, plants, and microorganisms' codon usage preferences have been revealed, which provides important information for the study of important traits and molecular evolution of species. provide basic theoretical data. However, most of the existing analysis models focus on the analysis of a single species, and the analysis of the evolutionary g...

Claims

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