A Causal Mutation Site for Chicken Feather Turning Character and Its Application in Genetic Breeding
A mutation site, genetic breeding technology, applied to the causal mutation site of chicken feather traits and its application in genetic breeding, can solve the problems of incomplete genome marker information, cumbersome, time-consuming, etc., to increase steps and difficulty , Accelerate the breeding process and shorten the breeding cycle
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Embodiment 1
[0047] Example 1 The method of identifying causal mutation sites of chicken feather turning traits based on whole genome deep resequencing
[0048] 1. Preparation of test samples
[0049] In this technical scheme, the collection of test samples is convenient and the preparation time is short, which can be mainly divided into two parts:
[0050] (1) Whole-genome deep resequencing samples: including purebred individuals of Xiushui yellow-feather black-bone chicken and samples of yellow chicken breeds from other places in Jiangxi that have a close genetic relationship with Xiushui yellow-feather black-bone chicken. The specific number of samples is: Xiushui yellow-feather black-bone chicken There were 9 flat-feathered black-bone chickens and 6 turned-feathered individuals; 12 Ningdu yellow chickens, which were closely related to Xiushui yellow-feathered black-bone chickens; 15 Guangfeng white-eared yellow chickens; the above samples were divided into feather-turned groups (test ...
Embodiment 2
[0074] Example 2 Identification of causal mutation sites for feather turning traits in chickens based on deep genome-wide resequencing
[0075] (1) Whole-genome deep resequencing of 42 tested chickens
[0076] After whole genome resequencing of 42 experimental chickens, it was found that the sequencing depth was 12.26×-22.47×, and the 1× whole genome coverage rate exceeded 97%, fully meeting the requirements of the present invention. A total of 872.94Gb of raw reads (raw reads) were obtained by sequencing, and 871.42Gb of clean data were obtained. The relevant data has been submitted to the public database GSAdatabase (CRA003681). After variation searching and filtering, a variation dataset of 13,110,337 SNPs and 1,075,314 indels was finally obtained.
[0077] (2) GWAS results of Xiushui yellow-feathered black-bone chicken
[0078] A univariate case-control model was used to carry out the association analysis of feather turning traits in Xiushui yellow-feathered black-bone c...
Embodiment 3
[0084] Application of embodiment 3 turning feather causal mutation
[0085] Using 95 Xiushui yellow-feathered black-bone chickens (50 of which were turned-feather individuals and 45 were flat-feathered individuals) as a large group of verification samples, the direct sequencing method of PCR products (see Table 2 for primers) was used to accurately detect the above two candidate causal factors respectively. Frequency distribution of mutation sites.
[0086] Table 2. Primer information for PCR detection of two candidate causal mutation sites
[0087]
[0088] The PCR reaction uses a 25 μL system: 10 × Taq DNA polymerase buffer (500mmol / L KCl, 100mmol / L Tris Cl, 15mmol / L MgCl 2 ) 2.5 μL, dNTPs (ATP, TTP, GTP, CTP concentration is 2.5mmol / L 1μL), primer (0.5μM) 1μL, Taq DNA polymerase (2.5U / μL) 0.25μL, genomic DNA template (20ng / μL) 40ng, ddH 2 O supplemented to 25 μL.
[0089] The amplification program was: 95°C for 3min, 94°C for 30s, 59°C for 35s, 72°C for 30s, 33 cycl...
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