Real-time fluorescent PCR testing primer, probe and immobilized kit for citrus ulcer bacteria and testing process thereof
A technology of canker bacteria and real-time fluorescence, applied in the field of bioengineering, can solve the problems of inability to detect asymptomatic materials of citrus, difficult to meet, and long detection cycle, so as to avoid the spread and pollution of the epidemic, avoid the problem of false negatives, and shorten the sample preparation the effect of time
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Embodiment 1
[0039] A primer sequence and kit for detection of Xanthomonas axonopodis pv.citri SYBR Green I real-time fluorescent PCR, used for the specific detection of Xanthomonas axonopodis pv.citri, which consists of: sample extraction reagent: TES buffer solution 100mL; 70% ethanol 100mL; nucleic acid eluent 10mL. Nucleic acid amplification solid-phase reagent: It is a PCR amplification solid-phase mixture lyophilized gel beads prepared by vacuum freeze-drying using a macromolecular stabilizer and can be stored and transported at room temperature. Its components contain the following reagents:
[0040] Component Final Concentration
[0041] PCR buffer 1X;
[0042] MgCl 2 23mmol / L;
[0043] dNTPs 0.2mmol / L;
[0044] 0.5umol / Lol / L for each primer pair;
[0045] Taq polymerase 1Unit / 25uL;
[0046] Add biomacromolecule stabilizer to 23uL / tube;
[0047] SYBR Green I fluorescent dye 10umol / Lol / L;
[0048] Primer pair used: 5’-CGG CAG ATT GGA AGT CA-3’
[0049] ...
Embodiment 2
[0053] A primer sequence and a solid-phase kit for detection of citrus canker (Xanthomonas axonopodis pv.citri) SYBR Green I real-time fluorescent PCR, used for the specific detection of Xanthomonas axonopodis pv.citri Asian strains, comprising: Sample extraction reagents; solid-phase reagents for nucleic acid amplification; harmless quantitative standards: freeze-dried products of recombinant positive control of citrus canker sores, lyophilized products of DNA from healthy citrus plants.
[0054] The primer sequence is: 5'-GTT CGG CGT CAA CAA C-3'
[0055] 5'-CGG TAG GCG ACT CAT TT-3' (serial number: NO.2).
[0056] The sample extraction reagents, solid-phase reagents for nucleic acid amplification, harmless quantitative standards and detection supplies are the same as those in Example 1.
Embodiment 3
[0058] A primer, probe sequence and solid-phase kit for detection of Xanthomonas axonopodis pv.citri fluorescently labeled probe PCR, used for rapid detection of Xanthomonas axonopodis pv.citri, comprising: sample extraction Reagents: TES buffer 100mL; 70% ethanol 100mL; nucleic acid eluent 10mL. Nucleic acid amplification solid-phase reagent: It is a PCR amplification solid-phase mixture lyophilized gel beads prepared by vacuum freeze-drying using a macromolecular stabilizer and can be stored and transported at room temperature. Its components contain the following reagents:
[0059] Component Final Concentration
[0060] PCR buffer 1X;
[0061] MgCl 2 23mmol / L;
[0062] dNTPs 0.2mmol / L;
[0063] 0.5umol / Lol / L for each primer pair;
[0064] Probe 0.2umol / Lol / L;
[0065] Taq polymerase 1Unit / 25uL;
[0066] Add biomacromolecule stabilizer to 23uL;
[0067] The primer pair used is: 5'-GAG TCG CCT ACC GAG AAA TCC-3'
[0068] 5'-ACC ACG G...
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