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Real-time fluorescent PCR testing primer, probe and immobilized kit for citrus ulcer bacteria and testing process thereof

A technology of canker bacteria and real-time fluorescence, applied in the field of bioengineering, can solve the problems of inability to detect asymptomatic materials of citrus, difficult to meet, and long detection cycle, so as to avoid the spread and pollution of the epidemic, avoid the problem of false negatives, and shorten the sample preparation the effect of time

Inactive Publication Date: 2008-07-23
CHONGQING UNIV +2
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, the disadvantages of the conventional method are that the detection cycle is long, the misjudgment rate is high for inexperienced people, and it cannot detect citrus asymptomatic materials, and it is difficult to meet the basic requirements of "fast, accurate and economical" plant quarantine.
In addition, the detection of citrus canker also includes phage test, enzyme-linked immunosorbent assay, dot immunosorbent assay, etc., which have problems such as complicated process, low sensitivity, high detection cost, and long cycle.

Method used

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Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0039] A primer sequence and kit for detection of Xanthomonas axonopodis pv.citri SYBR Green I real-time fluorescent PCR, used for the specific detection of Xanthomonas axonopodis pv.citri, which consists of: sample extraction reagent: TES buffer solution 100mL; 70% ethanol 100mL; nucleic acid eluent 10mL. Nucleic acid amplification solid-phase reagent: It is a PCR amplification solid-phase mixture lyophilized gel beads prepared by vacuum freeze-drying using a macromolecular stabilizer and can be stored and transported at room temperature. Its components contain the following reagents:

[0040] Component Final Concentration

[0041] PCR buffer 1X;

[0042] MgCl 2 23mmol / L;

[0043] dNTPs 0.2mmol / L;

[0044] 0.5umol / Lol / L for each primer pair;

[0045] Taq polymerase 1Unit / 25uL;

[0046] Add biomacromolecule stabilizer to 23uL / tube;

[0047] SYBR Green I fluorescent dye 10umol / Lol / L;

[0048] Primer pair used: 5’-CGG CAG ATT GGA AGT CA-3’

[0049] ...

Embodiment 2

[0053] A primer sequence and a solid-phase kit for detection of citrus canker (Xanthomonas axonopodis pv.citri) SYBR Green I real-time fluorescent PCR, used for the specific detection of Xanthomonas axonopodis pv.citri Asian strains, comprising: Sample extraction reagents; solid-phase reagents for nucleic acid amplification; harmless quantitative standards: freeze-dried products of recombinant positive control of citrus canker sores, lyophilized products of DNA from healthy citrus plants.

[0054] The primer sequence is: 5'-GTT CGG CGT CAA CAA C-3'

[0055] 5'-CGG TAG GCG ACT CAT TT-3' (serial number: NO.2).

[0056] The sample extraction reagents, solid-phase reagents for nucleic acid amplification, harmless quantitative standards and detection supplies are the same as those in Example 1.

Embodiment 3

[0058] A primer, probe sequence and solid-phase kit for detection of Xanthomonas axonopodis pv.citri fluorescently labeled probe PCR, used for rapid detection of Xanthomonas axonopodis pv.citri, comprising: sample extraction Reagents: TES buffer 100mL; 70% ethanol 100mL; nucleic acid eluent 10mL. Nucleic acid amplification solid-phase reagent: It is a PCR amplification solid-phase mixture lyophilized gel beads prepared by vacuum freeze-drying using a macromolecular stabilizer and can be stored and transported at room temperature. Its components contain the following reagents:

[0059] Component Final Concentration

[0060] PCR buffer 1X;

[0061] MgCl 2 23mmol / L;

[0062] dNTPs 0.2mmol / L;

[0063] 0.5umol / Lol / L for each primer pair;

[0064] Probe 0.2umol / Lol / L;

[0065] Taq polymerase 1Unit / 25uL;

[0066] Add biomacromolecule stabilizer to 23uL;

[0067] The primer pair used is: 5'-GAG TCG CCT ACC GAG AAA TCC-3'

[0068] 5'-ACC ACG G...

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PUM

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Abstract

This invention relates to oligonucleotide prime, mandarin orange ulcer germ real time fluorescence PCR detecting probe, solid phase reagent and its detecting method of mandarin orange ulcer germ detecting. It is a special quick detecting method direct towards mandarin orange ulcer disease, there is only 3 hours from sampling to detection, and detecting sensitivity is high, specificity is strong, stable and reliable. Misjudging in existing normal diagnosis method, missed diagnosis in electrical glass by asymmetry of germ and hard antibody preparation in single clone antibody and lack of specific reaction are conquered by this method, and false negative and false positive of normal PCR are avoided. Operation of solid phase kit is convenient, and its using is simple, and detecting sensitivity is high, specificity is strong, stable and reliable. So it is propitious to port detection of mandarin orange of import and export. Also it is propitious to allocation and transportation of mandarin orange inoculation, scion and other asymptomatic germ material, and early stage warning detection of non epidemic-stricken area orange ulcer disease.

Description

technical field [0001] The invention relates to a real-time fluorescent PCR solid-phase reagent kit and a quarantine inspection technology for the citrus canker pathogenic bacterium (Xanthomonas axonopodis pv.citri), which is a major pest. It belongs to the technical field of bioengineering. technical background [0002] Citrus canker is a major bacterial disease affecting the development of the global citrus industry, and it is also a key quarantine disease at home and abroad. Citrus canker fungus (Xanthomonas axonopodis pv.citri) is an important quarantine pest at home and abroad; it damages dozens of Rutaceae plants, including most commercial cultivars in Citrus parts (leaves, twigs, prickles, trunks, and fruit), while rarely directly killing the tree, can cause defoliation, fruit drop, tree weakening, and fruit canker lesions. [0003] The disease is mainly transmitted over long distances through the transportation of citrus materials such as seedlings, scions, and fru...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/68
Inventor 王中康殷幼平夏玉先袁青彭国雄曾德玉赵云曹月青
Owner CHONGQING UNIV
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