Oligonucleotide primer for detecting common pathogenic bacteria by adopting fluorescent quantitation PCR (Rich Client Platform) technology, method thereof for detecting common pathogenic bacteria and application thereof
An oligonucleotide and fluorescence quantitative technology, which is used in biochemical equipment and methods, recombinant DNA technology, and microbial determination/inspection. problem, to achieve the effect of efficient application range
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Embodiment 1
[0077] Example 1 Take the simultaneous detection of Salmonella and Listeria monocytogenes in water as an example
[0078] I. Carry out the design of Salmonella and Listeria monocytogenes specific oligonucleotide primers: primer design is a crucial part in the PCR technology, especially in multiple pathogen detection methods and applications of the present invention In the system, it is the most important factor in the whole system; the steps of specific oligonucleotide primer design are as follows:
[0079] (1) Log in to GenBank (http: / / ncbi.nlm.nih.gov / entrez), search the target gene fimA sequence of Salmonella and the target gene hly sequence of Listeria monocytogenes in the nucleic acid database, and check them one by one Screen out sequences with better sequencing quality;
[0080] (2) Use Primer Premier 5.0 software to design specific oligonucleotide primers for the target gene sequence;
[0081] (3) Submit the designed candidate sequences to GenBanK for BLAST compariso...
Embodiment 2
[0092] Example 2 Take the simultaneous detection of Shigella and Campylobacter jejuni in food as an example
[0093] I. Carry out the design of Shigella and Campylobacter jejuni-specific oligonucleotide primers: the steps of oligonucleotide primer design are as follows:
[0094] (1) Log in to GenBank (http: / / ncbi.nlm.nih.gov / entrez), search for the ipaH sequence of the target gene of Shigella and the htp sequence of the target gene of Campylobacter jejuni in the nucleic acid database, and screen out after checking one by one Sequences with good sequencing quality;
[0095] (2) Use Primer Premier 5.0 software to design specific primers for the target gene sequence;
[0096](3) Submit the designed candidate sequences to GenBanK for BLAST comparison, and select the one with the best specificity for synthesis. The primers for Shigella are Sf-ipa-1 (5'-CCGGGATAAAGTCAGAACTC-3') and Sf -ipa-2 (5'-CTCCCGACACGCCATAGAAA-3'), the length of the PCR product of the pair of primers is 131b...
Embodiment 3
[0107] Example 3 Taking the simultaneous detection of Enterobacter sakazakii and enterohaemorrhagic Escherichia coli O157 in feces as an example
[0108] I. Carry out the design of Enterobacter sakazakii, enterohemorrhagic Escherichia coli O157 specific primers: the steps of primer design are as follows:
[0109] (1) Log in to GenBank (http: / / ncbi.nlm.nih.gov / entrez), search the target gene ompA sequence of Enterobacter sakazakii and the target gene eae sequence of enterohemorrhagic Escherichia coli O157 in the nucleic acid database, and check them one by one Afterwards, sequences with better sequencing quality were screened out;
[0110] (2) Use Primer Premier 5.0 software to design specific primers for the target gene sequence;
[0111] (3) Submit the designed candidate sequences to GenBank for BLAST comparison, and select the one with the best specificity for synthesis. The primers for Enterobacter sakazakii are Es-ompA-1 (5'-GCTGAGCGTAGGTGTTTCCT-3') and Es -ompA-2 (5'-CA...
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