IL-23R gene polymorphism detection specific primer and liquid phase chip
A technology of IL-23R and gene polymorphism, applied in the field of molecular biology, can solve problems that cannot meet practical applications, achieve good signal-to-noise ratio, consistent detection effect, and simple steps
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Embodiment 1
[0023] Example 1 IL-23R gene polymorphism detection liquid chip mainly includes:
[0024] 1. ASPE Primers
[0025] Specific primer sequences were designed for wild-type and mutant types of four common genotypes C214T, C235T, T82G and C53T of IL-23R gene. ASPE primers consist of "Tag sequence + specific primer sequence". ASPE primer sequences are shown in the table below:
[0026] The ASPE primer sequence (Tag sequence+specific primer sequence) of table 1 IL-23R gene
[0027]
[0028]
[0029] Each ASPE primer includes two parts, the 5' end is a specific tag sequence for the anti-tag sequence on the corresponding microsphere, and the 3' end is a mutant or wild-type specific primer fragment (as shown in the above table 1). All ASPE primers were synthesized by Shanghai Sangon Bioengineering Technology Service Co., Ltd. Each synthesized primer was prepared into a stock solution of 100 pmol / mL with 10 mmol / L Tris Buffer.
[0030] 2. Microspheres coated with anti-tag sequ...
Embodiment 2
[0043] Example 2 Detection of samples using IL-23R gene detection liquid chip
[0044] The formula of described various solutions is as follows:
[0045] 50mM MES buffer (pH5.0) formula (250ml):
[0046]
[0047] 2×Tm hybridization buffer
[0048] Reagent
[0049] Store at 4°C after filtration.
[0050] ExoSAP-IT kit was purchased from US USB Company.
[0051] Biotin-labeled dCTP was purchased from Shanghai Sangon Bioengineering Technology Service Co., Ltd.
[0052] 1. Sample DNA extraction:
[0053] Refer to the relevant methods of DNA extraction in "Molecular Cloning" to obtain the DNA to be detected.
[0054] 2. PCR amplification of samples to be tested
[0055] Four pairs of primers were designed, and multiplex PCR amplified four target sequences containing four common genotypes C214T, C235T, T82G and C53T of the IL-23R gene in one step. The product sizes were 412bp, 480bp, 345bp and 343bp, respectively. SEQID NO.25-32) are shown in the above Table 3. ...
Embodiment 3
[0097] Example 3 Detection of IL-23R gene polymorphism site by liquid chip with different ASPE primers
[0098] 1. Design of liquid phase chip preparation (selection of Tag sequence and Anti-Tag sequence)
[0099]Taking the IL-23R gene C235T and T82G site mutation detection liquid chip as an example, the specific primer sequence of the 3' end of the ASPE primer was designed for the wild type and mutant type of C235T and T82G, and the Tag sequence at the 5' end of the ASPE primer was selected. From SEQ ID NO.1-SEQ ID NO.8, correspondingly, the anti-tag sequence coated on the microsphere and complementary to the corresponding tag sequence is selected from SEQ ID NO.17-SEQ ID NO.24. The specific design is shown in the following table (Table 7). The synthesis of ASPE primers, microspheres coated with anti-tag sequences, amplification primers, detection methods, etc. are as described in Example 1 and Example 2.
[0100] Table 7 Design of liquid phase chip preparation
[0101] ...
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