Newly found hepatitis C virus epitope
A hepatitis C virus and epitope technology, applied in the fields of bioinformatics and immunology, can solve the problems of multiple virus quasi-species, immunogen selection, strength limitation, and slow progress
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Embodiment 1
[0029] The design of the gene sequence of embodiment 1. recombinant HCV multi-epitope vaccine:
[0030] 1. Establishment of HCV proteome database
[0031] Search the uniprot protein database (http: / / beta.uniprot.org / ) with keywords: organism:"hepatitis c virus" AND name:"genome polyprotein" AND fragment:no AND reviewed:yes, and select the popular HCV genotypes in China The protein sequence databases of 1b, 2a, 2b, 3a, 3b, 6a were constructed (Table 1). The database contains 17 HCV proteome sequences.
[0032] Table 1. Selected HCV proteome databases
[0033] Uniprot ID NO.
isolate strain
P26663
1b
BK
Q9WMX2
1b
Con1
Q03463
1b
HC-J1
O92972
1b
HC-J4
P26662
1b
Japanese
Q00269
1b
HC-JT
Q913V3
1b
HCR6
P29846
1b
Taiwan
P26660
2a
HC-J6
Q99IB8
2a
JFH-1
P26661
2b
HC-J8
Q9DHD6
2b
JPUT97017
Q81495...
Embodiment 2
[0053] Example 2. Based on our predicted 12 antigenic epitopes, the preliminary exploration of the research method for the immunological characteristics of recombinant dominant epitopes
[0054] 1. Epitope selection and recombination: According to our predicted 12 antigenic epitopes, the dominant combination and series are carried out, and the gene synthesis is counted as Em.
[0055] 2. Construction of the eukaryotic expression vector: the obtained recombinant HCV multi-epitope vaccine gene sequence mcg targeting the Chinese HLA gene frequency was cloned into the eukaryotic expression vector pEGFP-N1 with the green fluorescent protein tag, and passed through liposome Transfect COS7 cells, detect its expression by RT-PCR and western blot, and directly observe the distribution and localization of mcg-EGFP fusion protein in the cells under a fluorescent microscope. Results The constructed eukaryotic expression vector pEGFP-mcg was successfully expressed in COS-7 cells. In the em...
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