Biological information analysis and calculation system and method based on container technology

A technology of biological information and container technology, which is applied in computing, instrumentation, resource allocation, etc., and can solve problems such as high analysis and computing costs, CPU waste, and free memory

Pending Publication Date: 2021-08-31
杭州绳武科技有限公司
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

During the analysis and calculation, it will cause a lot of CPU waste or idle memory, and the analysis and calculation costs remain high

Method used

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  • Biological information analysis and calculation system and method based on container technology
  • Biological information analysis and calculation system and method based on container technology

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Embodiment Construction

[0045] Embodiments of the present invention will be described in detail below in conjunction with the accompanying drawings.

[0046] Such as figure 1 As shown, the present invention provides a biological information analysis computing system based on container technology, including: a Web interaction module: the user inputs raw data to be analyzed for biological information and submits an analysis task.

[0047] Control module: According to the task information submitted by the user, it is divided into various types of analysis sub-tasks, and node containers (dockers) for analysis and calculation are created, real-time monitoring and processing of each task data status, and real-time update feedback on the task status.

[0048] Computation and analysis module: including various types of bioinformatics analysis and calculation containers, the system selects corresponding containers according to different analysis sub-tasks, and quickly deploys node containers for analysis and ca...

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Abstract

The invention relates to a biological information analysis and calculation system and method based on a container technology. The system comprises a Web interaction module, wherein a user inputs original data needing biological information analysis and submits an analysis task; a management module that is used for sending a deployment instruction at the management and control node and creating an analysis and calculation container for analysis and calculation; a calculation module that comprises a plurality of analysis and calculation containers and is used for performing analysis and calculation according to the original data input by the user and the content of the analysis task to obtain an analysis result; a storage module that is used for storing the original data input by the user and the analysis result obtained by the calculation module; and a data delivery platform that is used for forming a report from the analysis result and delivering the report to the user. The industrial standardization process of gene data analysis and calculation can be further improved, analysis is conducted in a pipelined mode, the idle cost of resources such as a CPU, a memory, storage and a network is reduced, and efficiency is improved.

Description

technical field [0001] The invention belongs to the technical field of biological information analysis, and in particular relates to a biological information analysis computing system and method based on container technology. Background technique [0002] Bioinformatics analysis and calculation mainly refers to the processing of a large amount of raw biological data (including genetic data, protein data, etc.) generated by today's biological detection technology. Calculation of these big data requires the use of professional servers for calculation. The existing computing technology solutions are mainly the following two: [0003] (1) Set up a local server to analyze and calculate bioinformatics data. According to different computing data requirements, various types of servers are purchased to build a local computing platform. Such as tower server, rack server, etc. This technical solution has problems such as high single investment cost, poor scalability, high daily main...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G06F9/50
CPCG06F9/5016G06F9/5027G06F9/5077
Inventor 余育超朱晓文
Owner 杭州绳武科技有限公司
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