Compositions and methods for the detection, diagnosis and therapy of hematological malignancies

a hematological malignancy and composition technology, applied in the field of cancer diagnosis and therapy, can solve the problems of bone marrow failure and organ failure, hematological malignancies with many symptoms, and the treatment of many hematological malignancies, including leukemia and lymphomas, remains difficul

Inactive Publication Date: 2004-01-01
CORIXA CORP +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

0047] It will also be understood that the kits, and compositions of the present invention comprise in an overall and general sense at least one or more particular polynucleotides, polypeptides, and peptides that comprise one or more contiguous sequence regions from one or more of the nucleic acid sequences disclosed herein in SEQ ID NOs:10,486-10,536; SEQ ID NOs:10,537-10,580; SEQ ID NOs:10,581-10,596; SEQ ID NO:10,597; SEQ ID NO:10,845; SEQ ID NO:10,846; SEQ ID NO:10,970; SEQ ID NO:10,971; SEQ ID NO:10,972; SEQ ID NO:10,973; SEQ ID NO:10,974; SEQ ID NO:10,469, SEQ ID NO:10,470; and SEQ ID NO:10,480 or from one or more of the amino acid sequences encoded by any one of the above polynucleotides or disclosed in any one of SEQ ID NOs:10,471-10,474; SEQ ID NO:10,481; SEQ ID NOs:10,599-10,819; SEQ ID NOs:10,820-10,842; SEQ ID NOs:10,849-10,908; and SEQ ID NOs:10,909-10,968, and that such peptide, polypeptide and polynucleotide compositions may be used in one or more of the particular methods and uses disclosed herein for the diagnosis, detection, prophylaxis, and therapy of one or more hematological cancers, and in particular, lymphomas of a variety of specific types. It will also be understood to the skilled artisan having benefit of the teachings of the present Specification, that the peptide and polypeptide compositions may be used to generate a T cell or an immune response in an animal, and that such compositions may also be administered to an animal from which immunospecific antibodies and antigen binding fragments may be isolated or identified that specifically bind to such peptides or polypeptides. Such an artisan will also recognize that the polynucleotides identified by the present disclosure may be used to produce such peptides, polypeptides, antibodies, and antigen binding fragments, by recombinant protein production methodologies that are also within the capability of the skilled artisan having benefit of the specific ami

Problems solved by technology

Hematological malignancies are generally serious disorders, resulting in a variety of symptoms, including bone marrow failure and organ failure.
Treatment for many hematological malignancies, including leukemias and lymphomas, remains difficult, and existing therapies are not universally effective.
While treatments involving specific immunotherapy appear to have considerable potential, such treatments have been li

Method used

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  • Compositions and methods for the detection, diagnosis and therapy of hematological malignancies
  • Compositions and methods for the detection, diagnosis and therapy of hematological malignancies
  • Compositions and methods for the detection, diagnosis and therapy of hematological malignancies

Examples

Experimental program
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example 1

5.1 Example 1

Identification of Hematological Malignancy-Related Antigen Polynucleotides

[0533] This Example illustrates the identification of hematological malignancy-related antigen polynucleotides from non-Hodgkin's lymphomas.

[0534] Hematological malignancy-related antigen polynucleotides were isolated by PCR-based subtraction. PolyA mRNA was prepared from T cell non-Hodgkin's lymphomas, B cell non-Hodgkin's lymphomas and normal tissues. Six cDNA libraries were constructed, PCR-subtracted and analyzed. Two libraries were constructed using pools of three T cell non-Hodgkin's lymphoma mRNAs (referred to herein as TCS libraries). Two others were constructed using pools of three B cell non-Hodgkin's lymphoma mRNAs (referred to herein as BCNHL libraries). Two other libraries were constructed using a pool of 2 Hodgkin's lymphoma mRNAs (referred to herein as HLS libraries. cDNA synthesis, hybridization and PCR amplification were performed according to Clontech's user manual (PCR-Select cD...

example 2

5.2 Example 2

Analysis of Subtracted cDNA Sequences by Microarray Analysis

[0542] Subtracted cDNA sequences were analyzed by microarray analysis to evaluate their expression in hematological malignancies and normal tissues. Using this approach, cDNA sequences were PCR amplified and their mRNA expression profiles in hematological malignancies and normal tissues are examined using cDNA microarray technology essentially as described (Shena et al., 1995).

[0543] In brief, the clones identified from the subtracted cDNA libraries analyses were immobilized and arrayed onto glass slides as multiple replicas on microarray slides and the slides were hybridized with two different sets of probes, with each location on the microarray slide corresponding to a unique cDNA clone (as many as 5500 clones can be arrayed on a single slide, or chip). Each chip is hybridized with a pair of cDNA probes that are fluorescence-labeled with Cy3 and Cy5, respectively. The set of probes derived from the hematologi...

example 3

5.3 Example 3

Polynucleotide and Polypeptide Compositions: Brief Description of the cDNA Clones and Open Reading Frames Identified by Subtractive Hybridization and Microarray Analysis

[0545] Table 7 in co-pending application U.S. Ser. No. 09 / 796,692 lists the sequences of the polynucleotides obtained during the analyses of the present invention. Shown are the 668 polynucleotide sequences, along with their clone name identifiers, as well as the serial number and filing date of the priority provisional patent application in which the clone was first identified.

[0546] Table 8 in co-pending application U.S. Ser. No. 09 / 796,692 identifies the putative open reading frames obtained from analyses of the cDNA sequences obtained in SEQ ID NO:1-SEQ ID NO:668 in the co-pending application. Shown are the sequence identifiers, the clone name and translation frame, and the start and stop nucleotides in the corresponding DNA sequence used to generate the polypeptide sequence of the open reading frame...

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Abstract

Disclosed are methods and compositions for the detection, diagnosis, prognosis, and therapy of hematological malignancies, and in particular, B cell leukemias, lymphomas and multiple myelomas. Disclosed are compositions, methods and kits for eliciting immune and T cell responses to specific malignancy-related antigenic polypeptides and antigenic polypeptide fragments thereof in an animal. Also disclosed are compositions and methods for use in the identification of cells and biological samples containing one or more hematological malignancy-related compositions, and methods for the detection and diagnosis of such diseases and affected cell types. Also disclosed are diagnostic and therapeutic kits, as well as methods for the diagnosis, therapy and/or prevention of a variety of leukemias and lymphomas.

Description

CROSS-REFERENCES TO RELATED APPLICATIONS[0001] This application is a continuation in part of the U.S. patent application Ser. No. ______, filed Nov. 6, 2001, Attorney Docket No. 014058-013520US, entitled COMPOSITIONS AND METHODS FOR THE DETECTION, DIAGNOSIS AND THERAPY OF HEMATOLOGICAL MALIGNANCIES, which is a continuation in part of U.S. Ser. No. 09 / 796,692 filed Mar. 1, 2001, which claims priority to United States Provisional Patent Application Serial Nos. 60 / 186,126, filed Mar. 1, 2000; Serial No. 60 / 190,479, filed Mar. 17, 2000; Serial No. 60 / 200,545, filed Apr. 27, 2000; Serial No. 60 / 200,303, filed Apr. 28, 2000; Serial No. 60 / 200,779, filed Apr. 28, 2000; Serial No. 60 / 200,999; filed May 1, 2000; Serial No.60 / 202,084, filed May 4, 2000; Serial No. 60 / 206,201, filed May 22, 2000; Serial No. 60 / 218,950, filed Jul. 14, 2000; Serial No. 60 / 222,903, filed Aug. 3, 2000; Serial No. 60 / 223,416, filed Aug. 4, 2000; and Serial No. 60 / 223,378, filed Aug. 7, 2000; the entire specificatio...

Claims

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Application Information

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IPC IPC(8): A61K38/00A61K39/00A61K47/48C07K14/47C07K14/735G01N33/574H01L21/84H01L27/12
CPCA61K38/00A61K39/00C07K14/47C07K14/70535C12Q1/6886C12Q2600/112G01N33/57426A61K47/6851A61K39/0011A61K2039/505C07K16/3061A61P35/00C12N5/06C12N15/11C12N15/63A61K51/1018C07K16/18C07K2317/55C07K2317/56C07K2317/569C07K2317/92C07K16/28C07K2317/24C12Q2600/106C12Q2600/118C12Q2600/158
Inventor GAIGER ALEXANDERALGATE PAUL A.MANNION JANECLAPPER JONATHAN DAVIDWANG AIJUNORDONEZ NADIACARTER LAURENMCNEILL PATRICIA DIANNE
Owner CORIXA CORP
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