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Micro-droplet data classification method

A micro-droplet and data technology, applied in the field of micro-droplets, can solve problems such as the decrease in the repeatability of classification results, the misjudgment of multiple classifications as one classification, and the vulnerability to the influence of scattered points.

Active Publication Date: 2019-12-31
TSINGHUA UNIV +1
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Problems solved by technology

Commonly used unsupervised classification algorithms include: k-means method, k-center method and expectation maximization method based on joint probability density function, etc. These methods have a common disadvantage: the number of initial values ​​(determining the number of categories) and The location has a great influence on the classification effect. In order to avoid this effect, it is often necessary to randomly select the initial value multiple times, but the random selection of the initial value will lead to a decrease in the repeatability of the classification results. In practical applications (especially clinical applications) The same set of data may give different interpretation results
This method uses density as the index of classification, which is the closest to the human interpretation of fluorescence data among all unsupervised methods (the fluorescence data seen by people is "grid" by the pixels of the display), but only by connected domain Categorical fluorescence data is susceptible to scatter, which can misjudge multiple categories as one

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Embodiment 1

[0031] Embodiment 1: A classification process of micro-droplet data

[0032] In this embodiment, a kind of micro-droplet data is used to illustrate the complete implementation process of the micro-droplet data classification method.

[0033] Step 1: Input droplet data and droplet classification morphology parameters

[0034] The input droplet data ( figure 1 a) A total of 50,000 members are included, and the dimension of each member is 2, corresponding to the fluorescence values ​​of the two channels. The classification morphological parameters of the micro-droplets are a checkerboard distribution of 2 rows and 2 columns, in which the number parameter is 4, and the reference point A in the lower left corner is used as a reference, and the relative position parameters are the reference point B directly above the reference point A, and the reference point A is directly above the reference point A. The datum point D on the right and the datum point C located on the right side o...

Embodiment 2

[0053] Embodiment 2: A classification process of clearly classified micro-droplet data

[0054] This example illustrates the applicability of the method to well-classified droplet data (the most common droplet data).

[0055] A clearly classified droplet data ( Figure 6 a), after step 2, the micro-droplet data is divided into grids ( Figure 6 b), step 3 divides the grid map into 4 regions ( Figure 6 c), step 4 determines that the optimal classification morphological parameter is a checkerboard distribution of 2 rows and 2 columns ( Figure 6 d), equal to the number of regions after step 3 is completed, so the micro-droplet data is directly classified according to the region ( Figure 6 e).

Embodiment 3

[0056] Example 3: A Classification Process of Droplet Data with Density Fluctuation

[0057] This embodiment focuses on the role of the merged region in processing micro-droplet data with density fluctuations.

[0058] A microdroplet data with density fluctuations ( Figure 7 a), after step 2, the micro-droplet data is divided into grids ( Figure 7 b), step 3 divides the grid map into 6 regions ( Figure 7 c), step 4 determines that the optimal classification morphological parameter is a checkerboard distribution of 2 rows and 2 columns ( Figure 7 d) Since the number of regions (6) after step 3 is completed is greater than the quantity parameter (4) of the optimal classification morphological parameters described in step 4, it is necessary to perform region merging. merged and become 4 regions after merging ( Figure 7 e), and then classify the droplet data according to the region ( Figure 7 f).

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Abstract

The invention provides a micro-droplet data classification method. The method comprises the following steps: inputting micro-droplet data and classification form parameters of micro-droplets; dividingthe micro-droplet data into grids, wherein all the grids form a grid atlas; dividing the grid atlas into at least one area according to the density difference of the micro-droplet data in each grid;setting a reference point combination according to the classification morphological parameters, comparing the reference point combination with the center of each region, and determining optimal classification morphological parameters; and classifying the micro-droplet data according to the number of the regions. The classification method can be used for automatically, objectively and accurately carrying out unsupervised and self-adaptive classification on various common micro-droplet data.

Description

technical field [0001] The invention relates to the technical field of micro-droplets, in particular to a method for classifying micro-droplet data. Background technique [0002] Micro-droplet technology can evenly divide the traditional reaction system into hundreds to millions of microreactors (the commonly used scale is tens of thousands to millions of microreactors), so as to achieve high-throughput single-molecule It has a wide range of applications in the detection of rare molecules and the absolute quantification of molecular numbers, including micro-droplet digital polymerase chain reaction, micro-droplet digital enzyme-linked immunosorbent reaction and micro-droplet-based high-throughput single cell analysis, etc. [0003] Since each micro-droplet will generate an n-dimensional vector during the detection process, each dimension usually corresponds to a fluorescent channel. After each reaction, hundreds to millions of data points (each of which is called a member ...

Claims

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Application Information

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IPC IPC(8): G06K9/62
CPCG06F18/241G06F18/214
Inventor 朱修锐郭永荆高山祝令香苏世圣付明珠王勇斗
Owner TSINGHUA UNIV