RNA-SeqTranscriptome Analysis of Spirodela Dormancy Without Reproduction and Identification of Molecular Targets Useful for Improving Biomass Production for Industrial Applications

Active Publication Date: 2015-06-11
RUTGERS THE STATE UNIV
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Benefits of technology

[0009]In accordance with the present invention, a method for altering carbon partitioning from starch to lipids in biomass produced from Duckweed cultures is disclosed. In one embodiment the method comprises introducing an agent or gene variant, which modulates expression of a gene product identified in Table S1, wherein the agent or gene variant is effective to reduce starch production and increase lipid production in said culture rela

Problems solved by technology

Consequently, they often become dormant to avoid adverse environments, such as poor nutrition, chilling temperature and drou

Method used

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  • RNA-SeqTranscriptome Analysis of Spirodela Dormancy Without Reproduction and Identification of Molecular Targets Useful for Improving Biomass Production for Industrial Applications
  • RNA-SeqTranscriptome Analysis of Spirodela Dormancy Without Reproduction and Identification of Molecular Targets Useful for Improving Biomass Production for Industrial Applications
  • RNA-SeqTranscriptome Analysis of Spirodela Dormancy Without Reproduction and Identification of Molecular Targets Useful for Improving Biomass Production for Industrial Applications

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[0044]To further uncover the regulation of gene expression as the phase switches, we took advantage of RNA deep sequencing, and compared the transcriptome between fronds and developing turions. A more comprehensive understanding of the gene repertoire and its regulation during turion formation has great potential for industrial applications including the redirection of carbon flow into higher energy products.

Calibration and Selection of Tissue Samples

[0045]A comprehensive study for turion formation has been done using abscisic acid (ABA) induction[14, 15, 17, 28, 29]. Three days after ABA induction, the Spirodelaprimordium is committed to turion development, which cannot be reversed. All primary biosynthesis of protein, mRNA and DNA are shutdown resulting in the onset of the dormant state[28]. To calibrate our growing conditions with previous investigations, we used transmission electron microscopy (TEM) to investigate different developmental stages. We chose fronds and developing t...

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Abstract

Compositions and methods are provided for altering carbon partitioning in biomass isolated from Duckweed.

Description

[0001]This application claims priority to U.S. Provisional Application No. 61 / 912,328 filed Dec. 5, 2013, the entire disclosure being incorporated herein by reference.FIELD OF THE INVENTION[0002]This invention relates to the fields of plant molecular biology and recombinant manipulation of plant species in order to maximize production of biomass having desirable characteristics. More specifically, the invention provides valuable gene targets for manipulating carbon production in Duckweed based on results obtained from deep sequencing of the Duckweed genome.BACKGROUND OF THE INVENTION[0003]Several publications and patent documents are referenced in this application in order to more fully describe the state of the art to which this invention pertains. Full citations for these references are found within and at the end of the specification. The disclosure of each of these references is incorporated by reference.[0004]Plants, unlike animals, do not have fur nor can they seek shelter to ...

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Application Information

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IPC IPC(8): C12N15/82
CPCC12N15/8245C12N15/8247C12N15/8218
Inventor MESSING, JOACHIMWANG, WENQIN
Owner RUTGERS THE STATE UNIV
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