Primer and probe sequence for detecting nucleotide fragment of shigella
A Shigella nucleotide and fragment technology, applied in biochemical equipment and methods, microbial determination/inspection, etc., can solve problems such as non-specific amplification, immature technology, PCR product contamination, etc.
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[0011] 1. Design of primers and probes: Through comparative analysis of all known Shigella genome sequences, a highly conserved segment (Shigella ipaH gene) with no secondary structure was selected, and multiple pairs of primers and probes were designed. Probes and primers are generally about 20 bases in length, and there is no complementary sequence between and within the primers. The optimal primer and probe sequence combinations are as follows:
[0012] Upstream primer SFipaHpf771: AAATGCGTTTCTATGGCGTGT
[0013] Downstream primer SFipaHpr863: CCCCAGAGGGAGAACCAGTC
[0014] Probe SfipaHpb802: AGCAAATGACCTCCGCACT
[0015] 2. Establishment and optimization of the reaction system: The target region template used in the establishment and optimization of the reaction system was obtained by the following method: take the Shigella standard strain and culture it for 48 hours after recovery, take 1ml of the culture solution for 10-fold serial dilution, Pick 10 -1 、10 -2 、10 -3 、...
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