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Method for cloning piricula oryzae gene of rice
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A rice blast resistance and coding gene technology, applied in the field of plant genetic engineering, can solve the problems of statistical errors in traits, narrow genetic background, and few genes for rice blast resistance
Inactive Publication Date: 2012-07-04
INST OF GENETICS & DEVELOPMENTAL BIOLOGY CHINESE ACAD OF SCI
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[0004] At present, the cloning of the rice blast resistance gene mainly relies on map-based cloning. Although both the indica rice 9311 and the japonica rice Nipponbare have complete genome sequences, which brings great convenience to the map-based cloning of rice genes, the cloning of the rice blast resistance gene is still difficult. said, there are still many difficulties
For example, the identification of rice blast resistance for each individual plant in a fine-mapping population is not only a huge workload, but also the incidence of rice blast in the field is easily affected by the environment, resulting in statistical errors in traits and accurate positioning; in addition, from the sequenced According to the 9311 and Nipponbare genome sequences, most of the NBS-LRR genes exist in clusters. Even if the target gene can be located in a certain segment, it is difficult to judge which one of the clustered genes is the real disease resistance gene; Furthermore, the currently used rice varieties have a narrow genetic background, and there are not many blast resistance genes available, while wild rice contains abundant blast resistance genes. However, the research on wild rice is still in its infancy. , without a fine genetic map and physical map, it is obviously more difficult to clone the rice blast resistance gene using the map
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Embodiment 1
[0050] Embodiment 1, the acquisition of Pid3-38
[0051] 1. Design primers
[0052] The rice blast resistance gene Pdi3 was cloned from the rice variety Digu. It has good resistance to the rice blast fungus race zhong- 10-8-14. The whole gene sequence of rice blast resistance gene Pid3 in Digu was obtained from NCBI (http: / / www.ncbi.nlm.nih.gov). The full length of Pid3 gene is 2775bp (sequence 5).
[0053] Primers were designed as follows:
[0054] d3F: 5'-atggcggagggtgttgtgggctc-3' and d3R: 5'-ttattgaatcctttctgcagcc-3'.
[0055] In order to facilitate subsequent experiments to connect the amplified gene into the expression vector, Xba1 and Sal1 restriction sites containing protective bases were added to the upstream and downstream primers respectively, so the amplification primers used are:
[0056] Pid3F: 5'-TTTCTAGAatggcggagggtgttgtgggctc-3' (Xba1) (SEQ ID NO: 3);
[0057] Pid3R: 5'-CTGTCGACttattgaatcctttctgcagcc-3' (Sal1) (SEQ ID NO: 4);
[0058] 2. Acquisition of P...
Embodiment 2
[0064] Embodiment 2, rice transfection Pid3-38 and its function research
[0065] 1. Transplanting Pid3-38 rice
[0066] The PCR product obtained in Example 1 was digested with Xba1 and Sal1, and the obtained fragment was digested with the plant binary expression vector PZH01 (Xiao, H., Wang, Y., Liu, D., Wang, W., Li, X., Zhao, X., Xu, J., Zhai, W. and Zhu, L(2003) Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference. Plant Mol. Biol.52, 957-966., The public can obtain it from the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences.) The carrier fragments were ligated, and the ligated product was transformed into Escherichia coli DH5a to obtain a transformant. The transformant was extracted with a plasmid and sent for sequencing. The result was that the plasmid was listed in the sequence list The nucleotides 1-2775 from the 5' end of Sequence 1 are inserted into the vector obtained between the Xba1 and Sal1 restriction sites of ...
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Abstract
The invention discloses a method for cloning a piricula oryzae gene. The method comprises the following steps of: 1) designing a primer according to a known piricula oryzae gene so as to obtain a primer pair; 2) performing polymerase chain reaction (PCR) amplification on the primer pair obtained in the step 1) by taking pyricularia grisea high-resistant paddy as a template so as to obtain PCR amplification products; 3) sequencing the PCR amplification products obtained in the step 2) so as to obtain the piricula oryzae gene; and 4) transferring the piricula oryzae gene into rice blast susceptible paddy, measuring a resistance spectrum of rice blast to obtain the piricula oryzae gene with a new resistance spectrum, namely the target piricula oryzae gene. Experiments of the method prove that: by the method, the piricula oryzae gene in wild paddy is directly separated and paddy varieties are transformed so as to obtain piricula oryzae paddy; and the resistance spectrum of transgenic plants is determined, and the piricula oryzae gene with a new resistance spectrum is screened out, so that the overall improvement on the paddy varieties is facilitated.
Description
technical field [0001] The invention relates to the field of plant genetic engineering, in particular to a method for cloning a rice blast resistance gene. Background technique [0002] Rice is one of the most important food crops in the world, and more than half of the world's population uses rice as the main food. Rice blast is one of the most important diseases of rice. The rice blast caused by rice blast reduces the output of rice every year by 11% to 30%, and when it is serious, it reduces the output by 40% to 50%, or even fails to harvest. [0003] Practice has proved that the use of disease-resistant rice varieties is one of the effective ways to deal with the damage of rice blast. So far, nearly one hundred blast resistance genes have been mapped in rice, and 14 genes have been cloned, which are Pib, Pita, Pi9, Pid2, Pizt, Pi2, Pi36, Pi37, Pi-km, Pi5, Pid3, Pb1, Pit, Pi-k h , except for the gene Pid2 which encodes a serine-threonine receptor-like kinase, the other...
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