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Genetic sample analysis method and electronic equipment

A sample analysis and genetic technology, applied in the field of data processing, can solve the problems of genetic sample data cache, slow user interface feedback, and the inability to reduce the amount of data, etc., to achieve the effect of reducing the occupied space

Active Publication Date: 2020-10-02
UNITED ELECTRONICS
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Problems solved by technology

[0005] In the multi-gene sample variation analysis system, it is necessary to frequently filter and compare the variation, and each operation may take more than tens of seconds to respond. For example, the Seave system of the Garven Institute inputs the data of 3 gene samples, and each operation The response time is more than 15 seconds, the user interface feedback is slow, and the operation experience is not good
[0006] In addition, due to the large amount of genetic sample data, it is impossible to cache the genetic sample data in the limited memory, and it may take up to ten minutes to read the genetic sample data from a general storage device (such as a hard disk). seconds of time
At the same time, due to too many conditions for filtering and comparison, it is impossible to reduce the amount of data that needs to be read by pre-indexing

Method used

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  • Genetic sample analysis method and electronic equipment
  • Genetic sample analysis method and electronic equipment
  • Genetic sample analysis method and electronic equipment

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Embodiment Construction

[0041] In order to make the objectives, technical solutions and advantages of the present invention clearer, the present invention will be further described in detail below with reference to specific embodiments and accompanying drawings.

[0042] It should be noted that all expressions using "first" and "second" in the embodiments of the present invention are for the purpose of distinguishing two entities with the same name but not the same or non-identical parameters. It can be seen that "first" and "second" It is only for the convenience of expression and should not be construed as a limitation to the embodiments of the present invention, and subsequent embodiments will not describe them one by one.

[0043] Based on the above purpose, the first aspect of the embodiments of the present invention provides a genetic sample analysis method that can improve the response speed of genetic sample analysis. like figure 1 As shown, it is a schematic flowchart of an embodiment of th...

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Abstract

The invention discloses a gene sample analysis method, comprising: receiving a gene sample selection instruction; displaying a variation filtering selection interface; at the same time, according to the selected gene samples, extracting common variation information of each selected gene sample to form a sample to be analyzed The data is cached in the memory; the filter condition selection instruction is received; the sample data to be analyzed is called from the memory, and the genetic sample variation analysis is completed according to the filter condition. The invention discloses an electronic device using the gene sample analysis method. The gene sample analysis method and the electronic equipment provided by the invention can improve the reaction speed of gene sample analysis.

Description

technical field [0001] The invention relates to the technical field of data processing, in particular to a gene sample analysis method and electronic equipment. Background technique [0002] Variation analysis of genetic samples needs to compare multiple genetic samples, and each gene sample can contain hundreds of thousands of variants, and the data volume can reach ten GB. For example, for a human exome (WES) data, each gene sample has about 200,000 variants, and each variant information data is about 1-2KB, so a gene sample has about 200-400MB of data. In a small-scale population data analysis, when there are 40 gene samples, the data volume reaches as much as 10GB. [0003] Variation analysis of genetic samples is to find out several of the most likely pathogenic variants from among the hundreds of thousands of variants, and multiple different filtering and comparison conditions need to be used repeatedly in the process, so the response speed of the user interface is I...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): G16B20/20G06F16/25
CPCG06F16/252G16B25/00
Inventor 蔡文君何光铸王东辉侯晓帆
Owner UNITED ELECTRONICS
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