Ophthalmic neuromyelitis spectrum disease biomarker group, application thereof, protein chip and kit
A technology of neuromyelitis optica and biomarkers, applied in the field of biomedicine, to overcome cumbersome operations and less specimen consumption
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Embodiment 1
[0062] The diagnostic criteria for patients with neuromyelitis optica spectrum disease (NMOSD) in Example 1 are as follows:
[0063] AQP4-IgG positive diagnostic criteria:
[0064] 1. Meet at least 1 core clinical symptom;
[0065] 2. AQP4-IgG positive (cell-based detection method);
[0066] 3. Exclude other possible diagnoses;
[0067] AQP4-IgG negative or no diagnostic criteria:
[0068] 1. In one or more clinical episodes, at least 2 core clinical features must be met, and all the following requirements must be met:
[0069] a. At least one core clinical feature must be optic neuritis, acute myelitis (LETM on MRI), or extreme posterior zone syndrome;
[0070] b. Spatial multiple (2 or more core clinical features appear);
[0071] c. Meet additional MRI requirements (depending on the actual situation);
[0072] 2. Use the most sensitive detection method available for negative or undetected AQP4-IgG;
[0073] 3. Exclude other possible diagnoses;
[0074] Core clinical features:
[0075] 1. Opt...
Embodiment 2
[0096] The example of the present invention is to detect the protein expression level of the serum of Example 1. The specific steps are as follows:
[0097] 1. Use sandwich-based antibody microarray to measure protein levels in serum. RayBiotech HumanCytokine Antibody Array Q4000 (QAH-CAA-4000, RayBiotech, Inc., Norcross, GA) was used for protein screening, which included a combination of 5 non-overlapping arrays to quantitatively measure 200 human cytokines.
[0098] Protein chip technology was used to determine the expression levels of 200 proteins in the 34 healthy control serum samples of Example 1, 41 NMOSD patient serum samples, and 12 MS patient serum samples: using a sandwich-based antibody microarray to measure serum levels Protein level. RayBiotech Human Cytokine Antibody Array Q4000 (QAH-CAA-4000, RayBiotech, Inc., Norcross, GA) was used for protein screening, which contains a combination of 5 non-overlapping arrays to quantitatively measure 200 human cytokines.
[0099]...
Embodiment 3
[0125] The examples of this application provide protein data conversion and graph generation, and the specific steps are as follows:
[0126] After calculating the concentration of the seven biomarkers in this application according to the specific software of the protein chip, perform data conversion before data analysis. The conversion formula is: log 2 (X+1). X is the concentration of different proteins corresponding to each sample. The transformed data is used for subsequent data analysis, including "principal component analysis, principal component analysis" (PCA), correlation heat map, model construction and weighted gene co-expression network analysis (WGCNA). All data processing and statistical tests are performed in the R language package (R Foundation for Statistical Computing, Vienna, Austria. URL https: / / www.R-project.org / ) and RStudio (RStudio, Inc., Boston, MAURL http) . All data is directly generated in RStudio, and then the pictures are integrated using Illustrat...
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