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Kit for detecting eight respiratory pathogens including novel coronavirus and application thereof

A pathogen detection and respiratory technology, applied in the field of 8 respiratory pathogen detection kits including the new coronavirus, can solve the problem of not including the new coronavirus detection target, and achieve a variety of virus qualitative types, high specificity and good specificity Effect

Pending Publication Date: 2022-01-28
AGCU SCIENTECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] At present, there are few kits for multiple detection of respiratory viruses in China. Boao Jingxin eight-item respiratory virus nucleic acid detection kit (constant temperature amplification chip method), Zhongzhi Bio three-item respiratory virus nucleic acid detection kit (double amplification method) and seven nucleic acid detection kits for respiratory pathogens have been approved for marketing, but none of the above products contain detection targets for the new coronavirus (SARS-CoV-2)
In foreign countries, there are no nucleic acid detection kits for the simultaneous detection of the new coronavirus SARS-CoV-2 and other different respiratory viruses.

Method used

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  • Kit for detecting eight respiratory pathogens including novel coronavirus and application thereof
  • Kit for detecting eight respiratory pathogens including novel coronavirus and application thereof
  • Kit for detecting eight respiratory pathogens including novel coronavirus and application thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0037] Example 1: Selection of target sequence and design of primer probe

[0038] For the selection of target sequences, the 2019 novel coronavirus (SARS-CoV-2) selects commonly used ORF1ab and N genes as its detection targets. Influenza A virus (InfluenzaA), influenza A virus H1N1 (2009) (InfluenzaAH1N12009), influenza A virus H3N2 (InfluenzaAH3N2) were designed with general primers and probes, and the widely used hemagglutinin gene was selected to design primers and probes. Influenza B virus selects the M protein gene. For adenovirus (HAdv), 104 subtypes have been found so far (http: / / hadvwg.gmu.edu / ), among which the human adenoviruses associated with respiratory diseases mainly include subgenus B (HAdV-3, 7, 11 , 14, 16, 21, 50, 55), C subgenus (HAdV-1, 2, 5, 6, 57) and E subgenus (HAdV-4) (see: Technical Guidelines for the Prevention and Control of Human Adenovirus Respiratory Tract Infection (2019 edition)), the design of the primers and probes of this kit is mainly b...

Embodiment 2

[0041] Embodiment 2: Pseudovirus synthesis and evaluation

[0042] Synthesize the target gene fragments of eight respiratory pathogens such as the new crown by artificial synthesis, then construct the MS2 expression vector, conduct induced expression, after assembly and purification, conduct concentration and purity identification, and submit the pseudovirus synthesis to Xiamen Zhishan Biotechnology Co., Ltd. for synthesis .

[0043] The concentration of the pseudovirus is verified after synthesis, and its concentration is not lower than 10 10 copies / mL, the amount of residual DNA is less than 100copies / mL.

Embodiment 3

[0044] Example 3: Establishment of a quadruple compound amplification system

[0045] Choose the RT-qPCR Mix of Wuxi Zhongde Meilian Biotechnology Co., Ltd. to evaluate the performance (specificity and sensitivity) of the eight pathogen detection primers designed and synthesized above, including the new crown, and select the best-performing primers for subsequent compound primer systems The construction of composite primer construction template selects the above-mentioned synthetic pseudovirus.

[0046] After completing the above single amplification performance evaluation, select primers and probes of different pathogens that do not interact with each other for combined amplification, determine the best pathogen combination or the best primer-probe combination, in order to achieve the best multiple amplification conditions ( That is, the single amplification performance is consistent with the performance under the multiplex amplification), and then the construction of the com...

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Abstract

The invention discloses a kit for detecting eight respiratory pathogens including novel coronavirus and application thereof. The kit comprises specific amplification primers for amplifying nine gene loci of the following eight respiratory pathogens, wherein the nine gene loci are ORF and N genes of a 2019 novel coronavirus, a hemagglutinin gene of an influenza A virus, an M protein gene of an influenza B virus, an upstream segment of a Hexon gene Loop1 of an adenovirus, a hemagglutinin-neuraminidase gene of a parainfluenza virus, an F protein gene of a respiratory syncytial virus, a VP1 capsid protein gene of a rhinovirus and a 16S rRNA gene of mycoplasma pneumoniae; and a specific amplification primer of the reference gene ACTB. According to the kit, a multiple RT-qPCR technology is adopted, highly conserved sequences of a human reference gene, a novel coronavirus SARS-CoV-2 and other seven common respiratory viruses are taken as target regions, nine groups of specific primers and probes are designed, a three-tube quadruple detection system is constructed, and higher specificity is achieved.

Description

technical field [0001] The invention belongs to the technical field of molecular diagnosis, and relates to a detection kit covering novel coronavirus and 7 other respiratory pathogens, specifically a detection kit for 8 respiratory pathogens containing new crown and its application. Background technique [0002] The initial symptoms of the new coronavirus (SARS-CoV-2) infection mainly include fever, general pain, fatigue, etc. The symptoms of parainfluenza virus (HPIV) and respiratory syncytial virus (HRSV) are similar. [0003] The current detection methods for diagnosing respiratory virus infection in my country mainly include: 1) culture method; 2) mass spectrometry; 3) immunological detection; 4) PCR method and so on. Among them, obtaining living organisms of pathogens (for bacteria, fungi, and viruses, mainly culture-positive) is the gold standard for the diagnosis of infectious diseases. However, in vitro culture often shows negative results in the early stage of inf...

Claims

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Application Information

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IPC IPC(8): C12Q1/70C12Q1/689C12Q1/04C12Q1/686C12N15/11C12R1/35
CPCC12Q1/701C12Q1/689C12Q1/686C12Q2537/143C12Q2561/113C12Q2563/107C12Q2545/114C12Q2521/107
Inventor 何小用陈林丽张雷胡琦赵鹏王伟黄银花
Owner AGCU SCIENTECH
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