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Visualization tools for digital polymerase chain reaction (PCR) data

A data and video technology, applied in the field of calculating the results of biological analysis and generating data and video

Active Publication Date: 2015-09-09
LIFE TECH CORP
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0005] For further analysis, the large number of data points of data collected from dPCR experiments is challenging to organize and visualize in a way that is useful to the user

Method used

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  • Visualization tools for digital polymerase chain reaction (PCR) data
  • Visualization tools for digital polymerase chain reaction (PCR) data
  • Visualization tools for digital polymerase chain reaction (PCR) data

Examples

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Embodiment Construction

[0020] The following description sets forth numerous specific details, such as specific configurations, parameters, examples, etc., in order to provide a more thorough understanding of the present invention. It should be appreciated, however, that such description is not intended as a limitation on the scope of the invention, but rather to provide a better description of the exemplary embodiments.

[0021] Those skilled in the art will recognize that operations of the various embodiments may be implemented using hardware, software, firmware, or a combination thereof as appropriate. For example, some processing may be performed using a processor or other digital circuitry under the control of software, firmware, or hard-wired logic. (The term "logic" herein refers to fixed hardware, programmable logic, and / or an appropriate combination thereof, as known to those skilled in the art, to perform the stated functions.) Software, as well as firmware, may be stored on computer-readab...

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Abstract

A method for generating a data visualization is provided. The method includes displaying a representation of a portion of detected data from a substrate to a user. The method further includes generating a data quality value for the portion of detected data and displaying, along with the representation of the portion of detected data, an indication of data quality value for the portion of detected data. The method further includes selecting, by the user, a quality value threshold, and displaying an adjusted indication of data quality value for the portion of detected data meeting the quality value threshold.

Description

Background technique [0001] Systems for biological and biochemical reactions have been used to monitor, measure and / or analyze such reactions in real time. Such systems are commonly used in sequencing, genotyping, polymerase chain reaction (PCR), and other biochemical reactions to monitor progress and provide quantitative data. [0002] Currently, the increasing need to provide a higher number of reactions per test or experiment has resulted in instruments capable of simultaneously performing a higher number of reactions. The increase in the number of sampling points in a test or experiment has led to microtiter plates and sampling formats that provide smaller sample volumes. In addition, techniques such as digital PCR (dPCR) have increased the need for smaller sample volumes to accommodate either zero or one target nucleotide sequence in all or most of a large number of test samples. [0003] Digital PCR can be used to detect and quantify the concentration of rare alleles t...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): G06F19/26G16B45/00
CPCG06F19/26G16B45/00G16B25/20G06T11/203G06T11/206
Inventor 哈里森·梁奈弗蒂塔·苏米·马朱木达尔杰弗里·马克斯西奥多·斯特劳博赖安·塔尔波特凯文·博德大卫·郝德
Owner LIFE TECH CORP
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