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Gene detection kit for medication guidance of antihypertensive drug lacidipine

A technology for lacidipine and hypertension, applied in the field of oligonucleotide products, can solve the problems of unsuitable multi-SNP detection, limitation of detection objects, rising cost, etc., to achieve high-quality medical services, simple and convenient result analysis, and low cost Effect

Inactive Publication Date: 2020-06-05
BIOYONG TECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, the detection method and kit provided by this invention patent only target the polymorphic site of the adrenergic receptor gene, and the detection objects have limitations.
Moreover, this method mainly uses the detection method of fluorescent quantitative PCR. Since fluorescent quantitative PCR needs to design specific probes for the variation of SNP sites, the throughput of this method is low, and only one polymorphic site can be measured in one experiment. Suitable for detection of multiple SNPs
In addition, if it is necessary to obtain the information of all relevant SNPs, it is necessary to conduct multiple detection tests, which will increase the cost

Method used

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  • Gene detection kit for medication guidance of antihypertensive drug lacidipine
  • Gene detection kit for medication guidance of antihypertensive drug lacidipine
  • Gene detection kit for medication guidance of antihypertensive drug lacidipine

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0085] Example 1: Primer design and synthesis

[0086] The target SNP peripheral sequence of this kit is searched in db_SNP (build 132) and Hapmap (Rel 28, PhaseⅡ+Ⅲ, Aug 10) database, and use these sequences to design multiple PCR primers and single base extension primers.

[0087] Design corresponding specific PCR primer core sequences (SEQ1a to SEQ6a) and specific extension primer core sequences (SEQ1b to SEQ6b) for 6 polymorphic sites related to the identification of drug types, including rs2238032, rs2239050, rs2239128, rs10898815, rs2429427, and rs588076 . 6 pairs of PCR primers and 6 extension primers (SEQ1a / b to SEQ6a / b) constitute 2 independent reaction systems. In these two independent reaction systems, SEQ1a to SEQ3a participate in an independent multiplex PCR reaction, SEQ1b to SEQ3b participate in a subsequent independent single-base extension reaction; SEQ4a to SEQ6a participate in another independent multiplex PCR reaction, SEQ4b To SEQ6b participates in a subsequen...

Embodiment 2

[0089] Example 2: Sample DNA extraction

[0090] A total of 10 samples of ordinary Chinese DNA were collected, and they were labeled A1-A10. Among them, sample collection, DNA extraction, etc., were collected from human venous blood according to the instructions and collected with EDTA anticoagulation tube. According to the instructions, the collected blood should be stored at 2-8°C for no more than one week, and stored at -20°C for no more than one month. It can be transported in a curling pot with ice or a foam box with ice. It is recommended to use fresh blood as much as possible. Genomic DNA extraction. Since this kit does not provide human genomic DNA extraction reagents, a commercial nucleic acid extraction kit (such as QIAGEN’s DNeasy Blood and Tissuekit) is used to extract human genomic DNA from 200μl of whole blood of each patient, and NanoDrop 2000( Thermo Company) quantified and standardized to 30ng / μl (A1-A10 respectively). Among them, the kit recommends the detect...

Embodiment 3

[0091] Example 3: Biological experiment

[0092] Use the ABI9700 PCR machine to test the 6 polymorphic loci that can distinguish the drug type according to the instructions.

[0093] The components used in the kit for PCR, PCR product purification and single base extension are:

[0094] Serial number Component name Main ingredients specification 1 PCR primer mix PCR primers 24μL / tube x1 tube 2 PCR reaction solution Taq enzyme, dNTP 72μL / tube x1 tube 3 Enzyme digestion reaction solution SAP enzyme 48μL / tube x1 tube 4 Extension primer mix Extension primer 24μL / tube x1 tube 5 Extension reaction solution Single base elongase, ddNTP 24μL / tube x1 tube 6 Positive quality control Human genomic DNA (30ng / μL) 10μL / tube x1 tube

[0095] The concentration of each primer pair is 500nmol / L.

[0096] According to the instructions, the specific operation method is as follows:

[0097] 1. PCR amplification

[0098] 1.1 In the PCR preparation area, prepare a 200μl PCR reaction tube according to the nu...

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Abstract

The invention provides a method utilizing extension primers with different molecular weights at different SNP (single nucleotide polymorphism) sites to detect multiple sites related to metabolism of an antihypertensive drug lacidipine by MALDI-TOF-MS (matrix-assisted laser desorption ionization time-of-flight mass spectrometry) and guide medication of lacidipine finally as well as a kit. The method comprises steps as follows: designing multiple amplification primers and extension primers respectively according to six target SNP sites to be detected; preparing a multi-amplification primer reaction system and an extension reaction system; performing amplification and single-base extension reactions on the six target SNP sites by multiple primers simultaneously respectively; performing time-of-flight mass spectrometry on products obtained after the single-base extension reaction, identifying genetypes of SNPs related to different drug metabolisms according to products, represented by massspectrum peaks, of extension primers with different molecular weights, and guiding the medication of the antihypertensive drug lacidipine. Meanwhile, the invention provides a detection kit utilizingthe method. The SNP sites related to metabolism of six antihypertensive drug lacidipine can be detected simultaneously, and the method has the advantages of low cost, no need of probe synthesis, low time consumption, simple and convenient result analysis and quite wide application field.

Description

Technical field [0001] The invention belongs to the field of molecular biology detection, and relates to a method and product for detecting multiple PCR single-base extension products using mass spectrometry characteristic peak maps. The method can simultaneously detect multiple PCR single-base extensions in two multiple PCR reactions Amplified oligonucleotide product. More specifically, this method uses different time-of-flight mass spectrometry characteristic peaks generated by different target oligonucleotide fragments during mass spectrometry typing to detect multiple target SNP sites at the same time to guide the antihypertensive drug Rasi Medication of Diping. Background technique [0002] Human genetic information is stored in the genome. In 2002, the final completion of the Human Genome Project, an international cooperation project, produced a detailed map of the human genome structure and provided reference sequences for related research. The human genome sequence cons...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6883C12Q1/6858C12N15/11
CPCC12Q1/6858C12Q1/6883C12Q2600/106C12Q2600/156C12Q2600/16C12Q2531/113C12Q2537/143C12Q2533/101C12Q2565/627
Inventor 马庆伟钟逾刘昕超
Owner BIOYONG TECH
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