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Detection reagent for genotype detection of SNP sites, application of detection reagent in preparation of corresponding kit and kit

A technology for detecting reagents and genotypes, applied in the biological field, can solve the problems of high operator requirements, difficult clinical promotion, and time-consuming

Active Publication Date: 2020-06-05
上海恩元生物科技有限公司 +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Among them, the first-generation sequencing in the gene sequencing method is the gold standard for genotyping. This method is suitable for high-throughput multi-site detection, but it is time-consuming, complicated to operate, requires high operators and low sensitivity, and is prone to crossover between samples. Polluted and not suitable for rapid clinical testing; and the amount of data obtained by sequencing is large, a lot of information is useless to patients, and result interpretation also requires some professional knowledge, and the cost is relatively high
Denaturing high performance liquid chromatography has the advantages of high automation and high throughput, but the equipment is expensive and not suitable for general medical institutions
The high-resolution melting curve method is fast, simple, economical and practical, but it has special requirements for equipment, and it needs to be installed with special software and a temperature-sensitive machine before it can be used. There are certain difficulties in clinical promotion.

Method used

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  • Detection reagent for genotype detection of SNP sites, application of detection reagent in preparation of corresponding kit and kit
  • Detection reagent for genotype detection of SNP sites, application of detection reagent in preparation of corresponding kit and kit
  • Detection reagent for genotype detection of SNP sites, application of detection reagent in preparation of corresponding kit and kit

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0040] This example specifically illustrates the corresponding primer sets and kits that can be used for the gene group of medication guidance for patients with schizophrenia.

[0041] This embodiment provides a detection reagent for genotype detection of SNP sites. The SNP sites targeted here are the rs2239063 site of the gene CACNA1C, the rs16921385 site of the gene SLC1A1 and the rs17022006 site of the gene CNTN4.

[0042] The detection reagent includes: a primer group, which includes a primer pair 1 for specifically amplifying the rs2239063 site of the gene CACNA1C to obtain the first amplification product, and a primer pair 1 for specifically amplifying the rs16921385 site of the gene SLC1A1 to obtain the second The primer pair 2 of the amplification product and the rs17022006 site used for specific amplification of the gene CNTN4 obtain the primer pair 3 of the third amplification product, wherein the nucleotide sequences of the upstream primer and the downstream primer o...

Embodiment 2

[0078] In this example, some cases of schizophrenia were sampled by using the gold standard generation sequencing method and the detection reagents, corresponding kits and corresponding methods provided in Example 1 to detect the rs2239063 site of the gene CACNA1C , the rs16921385 site of the gene SLC1A1 and the rs17022006 site of the gene CNTN4, the genotyping detection results are shown in Table 6.

[0079]

[0080] From the above results, it can be seen that the genotyping results obtained by using the kit of Example 1 are 100% consistent with the genotyping results obtained by the first-generation sequencing.

[0081] It can be seen that the detection reagents, corresponding kits and methods of Example 1 are used for detection, and the detection results of SNP site variation are highly reliable, indicating that the detection reagents of Example 1, corresponding kits and methods of use, It can accurately detect the genotyping of the rs2239063 locus of CACNA1C, the rs1692...

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Abstract

The invention provides a detection reagent for genotype detection of SNP sites, application of the detection reagent in preparation of a corresponding kit and the kit. The detection reagent includes aprimer group, wherein the primer group includes a No. 1 primer pair for specific amplification of the rs2239063 site of the CACNA1C gene so as to obtain a first amplification product, a No. 2 primerpair for specific amplification of the rs16921385 site of the SLC1A1 gene so as to obtain a second amplification product and a No. 3 primer pair for specific amplification of the rs17022006 site of the CNTN4 gene so as to obtain a third amplification product, the nucleotide sequences of an upstream primer and downstream primer in the No. 1 primer pair are shown in SEQ ID NO. 1 and SEQ ID NO. 2, and the nucleotide sequences of an upstream primer and downstream primer in the No. 2 primer pair are shown in SEQ ID NO. 3 and SEQ ID NO. 4; and the nucleotide sequences of an upstream primer and downstream primer in the No. 3 primer pair are shown in SEQ ID NO. 5 and SEQ ID NO. 6.

Description

technical field [0001] The invention belongs to the field of biotechnology, and specifically relates to a detection reagent for SNP locus genotype detection, the use of the detection reagent in preparing a kit for medication guidance for schizophrenia patients, the corresponding kit and its use method . Background technique [0002] Mental illness has become a highly prevalent disease in the world. According to statistics, more than 17% of Chinese adults suffer from depression, schizophrenia and other mental illnesses (Phillips.2009). Schizophrenia (SCZ) is one of the most common and serious mental illnesses, and it is prevalent in all populations around the world. Currently, about 1% of the world's population suffers from schizophrenia (Muesser.2004). Schizophrenia not only brings great suffering to the patients themselves and their families, but also brings heavy economic burdens to families, medical care and the whole society. In the Symposium on the Burden of Disease i...

Claims

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Application Information

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IPC IPC(8): C12Q1/6883C12Q1/6851
CPCC12Q1/6851C12Q1/6883C12Q2600/106C12Q2600/156C12Q2531/113C12Q2561/101
Inventor 孙家权任斌魏小元张玉祥秦罡
Owner 上海恩元生物科技有限公司