The utility model relates to the technical field of soybeans, in particular to a water selection mechanism for soybean seed production, which comprises a fixing frame, a first collecting frame, a second collecting frame, a fixing plate, an electric slide rail, a connecting rod and the like. The interior of the fixing frame is divided into a left cavity and a right cavity, a first collecting frame is slidably connected into the cavity on one side, a second collecting frame is slidably connected into the cavity on the other side, fixing plates are connected to the front side and the rear side of the fixing frame, electric sliding rails are connected to the fixing plates, and connecting rods are connected to sliding blocks of the electric sliding rails. The electric sliding rail, the connecting rod, the scraping plate, the connecting block and the guide block are arranged, according to different floating and sinking characteristics of healthy seeds and poor-quality seeds in water, floating poor-quality soybeans can be fed into the second collecting frame to be collected, the healthy soybeans sink into the water bottom, manual operation is not needed, and the working efficiency is improved. Automatic screening and classification of inferior soybeans and healthy soybeans are achieved, the working intensity of workers is reduced, and the soybean seed production efficiency is improved.